Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of signal transduction

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Sequoiadendron giganteum chr8 3 CH_sgi_928 5 6 0.0000349175
Sequoiadendron giganteum chr8 4 CH_sgi_928 5 6 0.0000349175

Available child term results

Ontology identifier Description Number of clusters
GO:0009787 regulation of abscisic acid-activated signaling pathway 20
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 20
GO:0009937 regulation of gibberellic acid mediated signaling pathway 4
GO:0010104 regulation of ethylene-activated signaling pathway 2
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010315 auxin efflux 2
GO:0032008 positive regulation of TOR signaling 4
GO:0032012 regulation of ARF protein signal transduction 6
GO:0035024 negative regulation of Rho protein signal transduction 2
GO:0043407 negative regulation of MAP kinase activity 4
GO:0043410 positive regulation of MAPK cascade 2
GO:0080036 regulation of cytokinin-activated signaling pathway 4
GO:0080037 negative regulation of cytokinin-activated signaling pathway 18
GO:0080038 positive regulation of cytokinin-activated signaling pathway 22
GO:0090227 regulation of red or far-red light signaling pathway 8
GO:0090228 positive regulation of red or far-red light signaling pathway 8
GO:1900457 regulation of brassinosteroid mediated signaling pathway 8
GO:1900458 negative regulation of brassinosteroid mediated signaling pathway 2
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 2
GO:1904263 positive regulation of TORC1 signaling 6
GO:2000022 regulation of jasmonic acid mediated signaling pathway 8
GO:2000031 regulation of salicylic acid mediated signaling pathway 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001