Functional clusters

Information

  • Type Gene Ontology
  • Description cellular response to stress

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr5 3 CH_ath_601 15 79 0.000359636
Sequoiadendron giganteum chr3 3 CH_sgi_1309 17 74 0.000717487
Solanum lycopersicum SL4.0ch03 3 CH_sly_538 7 13 0.000762095
Saccharum spontaneum Chr1C 3 CH_ssp_683 10 22 0.000131369
Triticum aestivum Chr5A 3 CH_tae_1322 6 7 0.000528727
Arabidopsis thaliana Chr5 4 CH_ath_601 15 79 0.000359636
Sequoiadendron giganteum chr3 4 CH_sgi_1309 17 74 0.000717487
Solanum lycopersicum SL4.0ch03 4 CH_sly_538 7 13 0.000762095
Saccharum spontaneum Chr1C 4 CH_ssp_683 10 22 0.000131369
Triticum aestivum Chr5A 4 CH_tae_1322 6 7 0.000528727

Available child term results

Ontology identifier Description Number of clusters
GO:0000012 single strand break repair 4
GO:0000077 DNA damage checkpoint signaling 4
GO:0000706 meiotic DNA double-strand break processing 2
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair 2
GO:0000730 DNA recombinase assembly 2
GO:0006281 DNA repair 4
GO:0006283 transcription-coupled nucleotide-excision repair 6
GO:0006284 base-excision repair 2
GO:0006289 nucleotide-excision repair 2
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006295 nucleotide-excision repair, DNA incision, 3'-to lesion 2
GO:0006983 ER overload response 4
GO:0006995 cellular response to nitrogen starvation 2
GO:0007095 mitotic G2 DNA damage checkpoint signaling 4
GO:0009267 cellular response to starvation 2
GO:0009970 cellular response to sulfate starvation 6
GO:0010213 non-photoreactive DNA repair 2
GO:0010363 regulation of plant-type hypersensitive response 2
GO:0010421 hydrogen peroxide-mediated programmed cell death 6
GO:0010569 regulation of double-strand break repair via homologous recombination 30
GO:0016036 cellular response to phosphate starvation 2
GO:0019430 removal of superoxide radicals 2
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0030968 endoplasmic reticulum unfolded protein response 6
GO:0032055 negative regulation of translation in response to stress 2
GO:0033683 nucleotide-excision repair, DNA incision 8
GO:0034051 negative regulation of plant-type hypersensitive response 2
GO:0034224 cellular response to zinc ion starvation 2
GO:0034263 positive regulation of autophagy in response to ER overload 6
GO:0034599 cellular response to oxidative stress 2
GO:0034605 cellular response to heat 2
GO:0034620 cellular response to unfolded protein 14
GO:0034976 response to endoplasmic reticulum stress 8
GO:0035874 cellular response to copper ion starvation 2
GO:0036297 interstrand cross-link repair 28
GO:0042276 error-prone translesion synthesis 8
GO:0042631 cellular response to water deprivation 14
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 2
GO:0045739 positive regulation of DNA repair 2
GO:0051103 DNA ligation involved in DNA repair 14
GO:0051365 cellular response to potassium ion starvation 4
GO:0070370 cellular heat acclimation 2
GO:0070417 cellular response to cold 4
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 2
GO:0071452 cellular response to singlet oxygen 4
GO:0071454 cellular response to anoxia 2
GO:0071456 cellular response to hypoxia 54
GO:0071472 cellular response to salt stress 2
GO:0071475 cellular hyperosmotic salinity response 4
GO:0071497 cellular response to freezing 6
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 8
GO:0071712 ER-associated misfolded protein catabolic process 4
GO:0072732 cellular response to calcium ion starvation 6
GO:0080040 positive regulation of cellular response to phosphate starvation 10
GO:0080135 regulation of cellular response to stress 2
GO:0080169 cellular response to boron-containing substance deprivation 2
GO:0097468 programmed cell death in response to reactive oxygen species 2
GO:0097510 base-excision repair, AP site formation via deaminated base removal 2
GO:1900034 regulation of cellular response to heat 4
GO:1900037 regulation of cellular response to hypoxia 6
GO:1900039 positive regulation of cellular response to hypoxia 6
GO:1900070 negative regulation of cellular hyperosmotic salinity response 6
GO:1904292 regulation of ERAD pathway 4
GO:1904294 positive regulation of ERAD pathway 8
GO:1905168 positive regulation of double-strand break repair via homologous recombination 2
GO:2000042 negative regulation of double-strand break repair via homologous recombination 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001