Functional clusters

Information

  • Type Gene Ontology
  • Description response to chemical

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr3 3 CH_ath_422 24 80 0.0000395977
Sequoiadendron giganteum HRSCAF_1 3 CH_sgi_790 15 22 0.00000310671
Triticum dicoccoides 6A 3 CH_tdi_464 21 61 0.000146995
Arabidopsis thaliana Chr3 4 CH_ath_422 24 80 0.0000395977
Sequoiadendron giganteum HRSCAF_1 4 CH_sgi_790 15 22 0.00000310671
Triticum dicoccoides 6A 4 CH_tdi_464 21 61 0.000146995

Available child term results

Ontology identifier Description Number of clusters
GO:0000302 response to reactive oxygen species 6
GO:0000303 response to superoxide 4
GO:0000304 response to singlet oxygen 8
GO:0002237 response to molecule of bacterial origin 4
GO:0002238 response to molecule of fungal origin 4
GO:0002240 response to molecule of oomycetes origin 8
GO:0005513 detection of calcium ion 26
GO:0006805 xenobiotic metabolic process 4
GO:0006935 chemotaxis 2
GO:0006982 response to lipid hydroperoxide 2
GO:0009269 response to desiccation 10
GO:0009270 response to humidity 4
GO:0009407 toxin catabolic process 20
GO:0009414 response to water deprivation 4
GO:0009415 response to water 10
GO:0009593 detection of chemical stimulus 2
GO:0009635 response to herbicide 2
GO:0009723 response to ethylene 2
GO:0009725 response to hormone 2
GO:0009733 response to auxin 196
GO:0009734 auxin-activated signaling pathway 10
GO:0009735 response to cytokinin 4
GO:0009736 cytokinin-activated signaling pathway 26
GO:0009737 response to abscisic acid 2
GO:0009739 response to gibberellin 2
GO:0009741 response to brassinosteroid 10
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009743 response to carbohydrate 2
GO:0009745 sucrose mediated signaling 8
GO:0009747 hexokinase-dependent signaling 4
GO:0009750 response to fructose 2
GO:0009751 response to salicylic acid 10
GO:0009753 response to jasmonic acid 4
GO:0009755 hormone-mediated signaling pathway 14
GO:0009787 regulation of abscisic acid-activated signaling pathway 20
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 20
GO:0009819 drought recovery 66
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 4
GO:0009863 salicylic acid mediated signaling pathway 4
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 2
GO:0009871 jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway 18
GO:0009873 ethylene-activated signaling pathway 90
GO:0009937 regulation of gibberellic acid mediated signaling pathway 4
GO:0010035 response to inorganic substance 8
GO:0010037 response to carbon dioxide 8
GO:0010043 response to zinc ion 16
GO:0010044 response to aluminum ion 18
GO:0010046 response to mycotoxin 12
GO:0010104 regulation of ethylene-activated signaling pathway 2
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010157 response to chlorate 4
GO:0010167 response to nitrate 6
GO:0010183 pollen tube guidance 14
GO:0010188 response to microbial phytotoxin 8
GO:0010193 response to ozone 58
GO:0010200 response to chitin 26
GO:0010226 response to lithium ion 16
GO:0010266 response to vitamin B1 28
GO:0010272 response to silver ion 2
GO:0010273 detoxification of copper ion 32
GO:0010288 response to lead ion 2
GO:0010299 detoxification of cobalt ion 4
GO:0010315 auxin efflux 2
GO:0010421 hydrogen peroxide-mediated programmed cell death 6
GO:0010555 response to mannitol 2
GO:0014070 response to organic cyclic compound 4
GO:0019430 removal of superoxide radicals 2
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0030968 endoplasmic reticulum unfolded protein response 6
GO:0031000 response to caffeine 72
GO:0031001 response to brefeldin A 6
GO:0032025 response to cobalt ion 4
GO:0032491 detection of molecule of fungal origin 8
GO:0032497 detection of lipopolysaccharide 4
GO:0033194 response to hydroperoxide 4
GO:0033198 response to ATP 8
GO:0033274 response to vitamin B2 2
GO:0033591 response to L-ascorbic acid 2
GO:0033993 response to lipid 10
GO:0034286 response to maltose 4
GO:0034599 cellular response to oxidative stress 2
GO:0034620 cellular response to unfolded protein 14
GO:0035865 cellular response to potassium ion 4
GO:0042178 xenobiotic catabolic process 6
GO:0042542 response to hydrogen peroxide 8
GO:0042631 cellular response to water deprivation 14
GO:0043201 response to leucine 6
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 2
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0045471 response to ethanol 26
GO:0046677 response to antibiotic 4
GO:0046685 response to arsenic-containing substance 8
GO:0046686 response to cadmium ion 4
GO:0046688 response to copper ion 46
GO:0046898 response to cycloheximide 8
GO:0051776 detection of redox state 2
GO:0060416 response to growth hormone 8
GO:0070887 cellular response to chemical stimulus 6
GO:0071215 cellular response to abscisic acid stimulus 6
GO:0071219 cellular response to molecule of bacterial origin 2
GO:0071226 cellular response to molecule of fungal origin 2
GO:0071230 cellular response to amino acid stimulus 2
GO:0071248 cellular response to metal ion 2
GO:0071249 cellular response to nitrate 4
GO:0071277 cellular response to calcium ion 8
GO:0071287 cellular response to manganese ion 4
GO:0071289 cellular response to nickel ion 24
GO:0071291 cellular response to selenium ion 4
GO:0071294 cellular response to zinc ion 14
GO:0071323 cellular response to chitin 10
GO:0071332 cellular response to fructose stimulus 4
GO:0071345 cellular response to cytokine stimulus 4
GO:0071360 cellular response to exogenous dsRNA 4
GO:0071370 cellular response to gibberellin stimulus 2
GO:0071395 cellular response to jasmonic acid stimulus 2
GO:0071398 cellular response to fatty acid 4
GO:0071446 cellular response to salicylic acid stimulus 2
GO:0071452 cellular response to singlet oxygen 4
GO:0071454 cellular response to anoxia 2
GO:0071456 cellular response to hypoxia 54
GO:0071472 cellular response to salt stress 2
GO:0071475 cellular hyperosmotic salinity response 4
GO:0071585 detoxification of cadmium ion 2
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 8
GO:0071712 ER-associated misfolded protein catabolic process 4
GO:0071722 detoxification of arsenic-containing substance 2
GO:0071731 response to nitric oxide 4
GO:0071732 cellular response to nitric oxide 2
GO:0072708 response to sorbitol 2
GO:0072710 response to hydroxyurea 8
GO:0072722 response to amitrole 10
GO:0072756 cellular response to paraquat 4
GO:0080036 regulation of cytokinin-activated signaling pathway 4
GO:0080037 negative regulation of cytokinin-activated signaling pathway 18
GO:0080038 positive regulation of cytokinin-activated signaling pathway 22
GO:0080169 cellular response to boron-containing substance deprivation 2
GO:0080184 response to phenylpropanoid 4
GO:0097305 response to alcohol 6
GO:0097468 programmed cell death in response to reactive oxygen species 2
GO:0097501 stress response to metal ion 2
GO:0098754 detoxification 6
GO:0098755 maintenance of seed dormancy by absisic acid 4
GO:0098869 cellular oxidant detoxification 10
GO:1900037 regulation of cellular response to hypoxia 6
GO:1900039 positive regulation of cellular response to hypoxia 6
GO:1900070 negative regulation of cellular hyperosmotic salinity response 6
GO:1900457 regulation of brassinosteroid mediated signaling pathway 8
GO:1900458 negative regulation of brassinosteroid mediated signaling pathway 2
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 2
GO:1901181 negative regulation of cellular response to caffeine 2
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 6
GO:1901698 response to nitrogen compound 2
GO:1901700 response to oxygen-containing compound 8
GO:1902065 response to L-glutamate 4
GO:1902074 response to salt 6
GO:1902584 positive regulation of response to water deprivation 2
GO:1903842 response to arsenite ion 2
GO:1904292 regulation of ERAD pathway 4
GO:1904294 positive regulation of ERAD pathway 8
GO:1904383 response to sodium phosphate 14
GO:1904975 response to bleomycin 2
GO:1905582 response to mannose 14
GO:1905957 regulation of cellular response to alcohol 2
GO:1990359 stress response to zinc ion 2
GO:1990532 stress response to nickel ion 6
GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane 132
GO:2000022 regulation of jasmonic acid mediated signaling pathway 8
GO:2000031 regulation of salicylic acid mediated signaling pathway 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001