Functional clusters
Information
- Type Gene Ontology
- Description regulation of systemic acquired resistance
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00079 | 3 | CH_atr_190 | 3 | 5 | 0.0000643142 |
| Cenchrus purpureus | GWHAORA00000001 | 3 | CH_cpu_446 | 3 | 3 | 0.00000419304 |
| Cenchrus purpureus | GWHAORA00000008 | 3 | CH_cpu_527 | 3 | 4 | 0.0000167672 |
| Digitaria exilis | Dexi_CM05836_chr03A | 3 | CH_dex_350 | 3 | 3 | 0.00000612189 |
| Digitaria exilis | Dexi_CM05836_chr03B | 3 | CH_dex_351 | 3 | 3 | 0.00000612189 |
| Eragrostis curvula | 7 | 3 | CH_ecu_216 | 4 | 4 | 0.000000000416192 |
| Miscanthus sinensis | Chr16 | 3 | CH_msi_281 | 3 | 4 | 0.0000082716 |
| Panicum hallii | Chr03 | 3 | CH_pha_80 | 4 | 4 | 0.000000000803642 |
| Populus trichocarpa | Chr02 | 3 | CH_ptr_302 | 3 | 3 | 0.0000203464 |
| Sorghum bicolor | Chr09 | 3 | CH_sbi_80 | 4 | 4 | 0.000000000606461 |
| Secale cereale | GWHASIY00000003 | 3 | CH_sce_225 | 4 | 7 | 0.00000014797 |
| Sequoiadendron giganteum | chr7 | 3 | CH_sgi_1019 | 3 | 4 | 0.0000520045 |
| Sequoiadendron giganteum | HRSCAF_1 | 3 | CH_sgi_426 | 5 | 9 | 0.000000000630832 |
| Sequoiadendron giganteum | chr4 | 3 | CH_sgi_874 | 3 | 3 | 0.0000130076 |
| Setaria italica | scaffold_3 | 3 | CH_sit_211 | 3 | 3 | 0.00000229943 |
| Spirodela polyrhiza | pseudo14 | 3 | CH_spo_109 | 3 | 3 | 0.0000127155 |
| Saccharum spontaneum | Chr7D | 3 | CH_ssp_222 | 4 | 6 | 0.000000099656 |
| Saccharum spontaneum | Chr7B | 3 | CH_ssp_577 | 3 | 4 | 0.0000518273 |
| Saccharum spontaneum | Chr7A | 3 | CH_ssp_93 | 5 | 6 | 0.0000000000199814 |
| Setaria viridis | Chr_03 | 3 | CH_svi_215 | 3 | 3 | 0.00000185822 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00111.1 | 3 | CH_zjn_41 | 4 | 7 | 0.0000000565089 |
| Amborella trichopoda | AmTr_v1.0_scaffold00079 | 4 | CH_atr_190 | 3 | 5 | 0.0000643142 |
| Cenchrus purpureus | GWHAORA00000001 | 4 | CH_cpu_446 | 3 | 3 | 0.00000419304 |
| Cenchrus purpureus | GWHAORA00000008 | 4 | CH_cpu_527 | 3 | 4 | 0.0000167672 |
| Digitaria exilis | Dexi_CM05836_chr03A | 4 | CH_dex_350 | 3 | 3 | 0.00000612189 |
| Digitaria exilis | Dexi_CM05836_chr03B | 4 | CH_dex_351 | 3 | 3 | 0.00000612189 |
| Eragrostis curvula | 7 | 4 | CH_ecu_216 | 4 | 4 | 0.000000000416192 |
| Miscanthus sinensis | Chr16 | 4 | CH_msi_281 | 3 | 4 | 0.0000082716 |
| Panicum hallii | Chr03 | 4 | CH_pha_80 | 4 | 4 | 0.000000000803642 |
| Populus trichocarpa | Chr02 | 4 | CH_ptr_302 | 3 | 3 | 0.0000203464 |
| Sorghum bicolor | Chr09 | 4 | CH_sbi_80 | 4 | 4 | 0.000000000606461 |
| Secale cereale | GWHASIY00000003 | 4 | CH_sce_225 | 4 | 7 | 0.00000014797 |
| Sequoiadendron giganteum | chr7 | 4 | CH_sgi_1019 | 3 | 4 | 0.0000520045 |
| Sequoiadendron giganteum | HRSCAF_1 | 4 | CH_sgi_426 | 5 | 9 | 0.000000000630832 |
| Sequoiadendron giganteum | chr4 | 4 | CH_sgi_874 | 3 | 3 | 0.0000130076 |
| Setaria italica | scaffold_3 | 4 | CH_sit_211 | 3 | 3 | 0.00000229943 |
| Spirodela polyrhiza | pseudo14 | 4 | CH_spo_109 | 3 | 3 | 0.0000127155 |
| Saccharum spontaneum | Chr7D | 4 | CH_ssp_222 | 4 | 6 | 0.000000099656 |
| Saccharum spontaneum | Chr7B | 4 | CH_ssp_577 | 3 | 4 | 0.0000518273 |
| Saccharum spontaneum | Chr7A | 4 | CH_ssp_93 | 5 | 6 | 0.0000000000199814 |
| Setaria viridis | Chr_03 | 4 | CH_svi_215 | 3 | 3 | 0.00000185822 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00111.1 | 4 | CH_zjn_41 | 4 | 7 | 0.0000000565089 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:1901672 | positive regulation of systemic acquired resistance | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |