Functional clusters

Information

  • Type Gene Ontology
  • Description defense response to other organism

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG01 3 CH_aco_73 6 6 0.0000571986
Aegilops tauschii 6D 3 CH_ata_381 5 5 0.000503526
Eragrostis curvula 3 3 CH_ecu_91 13 14 8.98984e-16
Oryza alta GWHAZTO00000017 3 CH_oal_389 7 11 0.0000155524
Oryza brachyantha 5 3 CH_obr_86 10 17 0.000000119791
Panicum hallii Chr02 3 CH_pha_416 5 5 0.000771703
Ananas comosus LG01 4 CH_aco_73 6 6 0.0000571986
Aegilops tauschii 6D 4 CH_ata_381 5 5 0.000503526
Eragrostis curvula 3 4 CH_ecu_91 13 14 8.98984e-16
Oryza alta GWHAZTO00000017 4 CH_oal_389 7 11 0.0000155524
Oryza brachyantha 5 4 CH_obr_86 10 17 0.000000119791
Panicum hallii Chr02 4 CH_pha_416 5 5 0.000771703

Available child term results

Ontology identifier Description Number of clusters
GO:0002213 defense response to insect 28
GO:0002215 defense response to nematode 6
GO:0002220 innate immune response activating cell surface receptor signaling pathway 6
GO:0002229 defense response to oomycetes 4
GO:0002230 positive regulation of defense response to virus by host 14
GO:0002752 cell surface pattern recognition receptor signaling pathway 4
GO:0002758 innate immune response-activating signal transduction 8
GO:0009627 systemic acquired resistance 6
GO:0009682 induced systemic resistance 2
GO:0009861 jasmonic acid and ethylene-dependent systemic resistance 6
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 4
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 2
GO:0009871 jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway 18
GO:0010112 regulation of systemic acquired resistance 42
GO:0010363 regulation of plant-type hypersensitive response 2
GO:0034051 negative regulation of plant-type hypersensitive response 2
GO:0042742 defense response to bacterium 10
GO:0045087 innate immune response 6
GO:0045088 regulation of innate immune response 2
GO:0045089 positive regulation of innate immune response 2
GO:0050691 regulation of defense response to virus by host 2
GO:0050829 defense response to Gram-negative bacterium 12
GO:0050832 defense response to fungus 4
GO:0051214 RNAi-mediated antiviral immunity against RNA virus 18
GO:0051607 defense response to virus 20
GO:0051841 positive regulation by host of cytolysis of symbiont cells 14
GO:0061760 antifungal innate immune response 2
GO:0140426 PAMP-triggered immunity signalling pathway 6
GO:1900150 regulation of defense response to fungus 18
GO:1900367 positive regulation of defense response to insect 6
GO:1900424 regulation of defense response to bacterium 6
GO:1900425 negative regulation of defense response to bacterium 8
GO:1900426 positive regulation of defense response to bacterium 4
GO:1901672 positive regulation of systemic acquired resistance 4
GO:1902288 regulation of defense response to oomycetes 74
GO:1902289 negative regulation of defense response to oomycetes 10
GO:1902290 positive regulation of defense response to oomycetes 4
GO:1905034 regulation of antifungal innate immune response 12

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001