Functional clusters

Information

  • Type Gene Ontology
  • Description cellular response to chemical stimulus

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Eragrostis curvula Contig25 3 CH_ecu_578 17 78 0.0000307627
Eragrostis curvula 1 3 CH_ecu_866 13 54 0.000891202
Oryza alta GWHAZTO00000003 3 CH_oal_561 11 39 0.000141014
Eragrostis curvula Contig25 4 CH_ecu_578 17 78 0.0000307627
Eragrostis curvula 1 4 CH_ecu_866 13 54 0.000891202
Oryza alta GWHAZTO00000003 4 CH_oal_561 11 39 0.000141014

Available child term results

Ontology identifier Description Number of clusters
GO:0006805 xenobiotic metabolic process 4
GO:0009734 auxin-activated signaling pathway 10
GO:0009736 cytokinin-activated signaling pathway 26
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009745 sucrose mediated signaling 8
GO:0009747 hexokinase-dependent signaling 4
GO:0009755 hormone-mediated signaling pathway 14
GO:0009787 regulation of abscisic acid-activated signaling pathway 20
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 20
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 4
GO:0009863 salicylic acid mediated signaling pathway 4
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 2
GO:0009871 jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway 18
GO:0009873 ethylene-activated signaling pathway 90
GO:0009937 regulation of gibberellic acid mediated signaling pathway 4
GO:0010104 regulation of ethylene-activated signaling pathway 2
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010315 auxin efflux 2
GO:0010421 hydrogen peroxide-mediated programmed cell death 6
GO:0019430 removal of superoxide radicals 2
GO:0030968 endoplasmic reticulum unfolded protein response 6
GO:0034599 cellular response to oxidative stress 2
GO:0034620 cellular response to unfolded protein 14
GO:0035865 cellular response to potassium ion 4
GO:0042178 xenobiotic catabolic process 6
GO:0042631 cellular response to water deprivation 14
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 2
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0071215 cellular response to abscisic acid stimulus 6
GO:0071230 cellular response to amino acid stimulus 2
GO:0071248 cellular response to metal ion 2
GO:0071249 cellular response to nitrate 4
GO:0071277 cellular response to calcium ion 8
GO:0071287 cellular response to manganese ion 4
GO:0071289 cellular response to nickel ion 24
GO:0071291 cellular response to selenium ion 4
GO:0071294 cellular response to zinc ion 14
GO:0071323 cellular response to chitin 10
GO:0071332 cellular response to fructose stimulus 4
GO:0071345 cellular response to cytokine stimulus 4
GO:0071360 cellular response to exogenous dsRNA 4
GO:0071370 cellular response to gibberellin stimulus 2
GO:0071395 cellular response to jasmonic acid stimulus 2
GO:0071398 cellular response to fatty acid 4
GO:0071446 cellular response to salicylic acid stimulus 2
GO:0071452 cellular response to singlet oxygen 4
GO:0071454 cellular response to anoxia 2
GO:0071456 cellular response to hypoxia 54
GO:0071472 cellular response to salt stress 2
GO:0071475 cellular hyperosmotic salinity response 4
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 8
GO:0071712 ER-associated misfolded protein catabolic process 4
GO:0071732 cellular response to nitric oxide 2
GO:0072756 cellular response to paraquat 4
GO:0080036 regulation of cytokinin-activated signaling pathway 4
GO:0080037 negative regulation of cytokinin-activated signaling pathway 18
GO:0080038 positive regulation of cytokinin-activated signaling pathway 22
GO:0080169 cellular response to boron-containing substance deprivation 2
GO:0097468 programmed cell death in response to reactive oxygen species 2
GO:0098869 cellular oxidant detoxification 10
GO:1900037 regulation of cellular response to hypoxia 6
GO:1900039 positive regulation of cellular response to hypoxia 6
GO:1900070 negative regulation of cellular hyperosmotic salinity response 6
GO:1900457 regulation of brassinosteroid mediated signaling pathway 8
GO:1900458 negative regulation of brassinosteroid mediated signaling pathway 2
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 2
GO:1901181 negative regulation of cellular response to caffeine 2
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 6
GO:1905957 regulation of cellular response to alcohol 2
GO:2000022 regulation of jasmonic acid mediated signaling pathway 8
GO:2000031 regulation of salicylic acid mediated signaling pathway 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001