Functional clusters
Information
- Type Gene Ontology
- Description ethylene-activated signaling pathway
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aegilops tauschii | 4D | 3 | CH_ata_184 | 4 | 4 | 0.00000650669 |
| Aegilops tauschii | 2D | 3 | CH_ata_69 | 6 | 7 | 0.000000000551252 |
| Amborella trichopoda | AmTr_v1.0_scaffold00010 | 3 | CH_atr_320 | 3 | 3 | 0.000665504 |
| Cenchrus purpureus | GWHAORA00000005 | 3 | CH_cpu_559 | 4 | 4 | 0.0000263002 |
| Cenchrus purpureus | GWHAORA00000014 | 3 | CH_cpu_560 | 4 | 4 | 0.0000263002 |
| Digitaria exilis | Dexi_CM05836_chr09B | 3 | CH_dex_354 | 4 | 4 | 0.00000784573 |
| Digitaria exilis | Dexi_CM05836_chr09A | 3 | CH_dex_418 | 4 | 5 | 0.0000391231 |
| Glycine max | Gm03 | 3 | CH_gma_170 | 6 | 9 | 0.0000000469656 |
| Glycine max | Gm10 | 3 | CH_gma_307 | 4 | 4 | 0.0000260648 |
| Glycine max | Gm19 | 3 | CH_gma_308 | 4 | 4 | 0.0000260648 |
| Glycine max | Gm03 | 3 | CH_gma_309 | 4 | 4 | 0.0000260648 |
| Glycine max | Gm13 | 3 | CH_gma_82 | 7 | 9 | 0.0000000000935748 |
| Hordeum vulgare | chr6H | 3 | CH_hvu_379 | 4 | 9 | 0.000330793 |
| Lolium perenne | Lp_chr4_0 | 3 | CH_lpe_120 | 6 | 17 | 0.00000002938 |
| Lolium perenne | Lp_chr2_0 | 3 | CH_lpe_201 | 4 | 5 | 0.00000368762 |
| Lolium perenne | Lp_chr6_0 | 3 | CH_lpe_456 | 4 | 15 | 0.000992033 |
| Oryza alta | GWHAZTO00000003 | 3 | CH_oal_324 | 4 | 4 | 0.00000304062 |
| Oryza sativa ssp. japonica | chr03 | 3 | CH_osa_310 | 4 | 7 | 0.00010996 |
| Phyllostachys edulis | hic_scaffold_3 | 3 | CH_ped_273 | 4 | 4 | 0.0000238695 |
| Phyllostachys edulis | hic_scaffold_21 | 3 | CH_ped_274 | 4 | 4 | 0.0000238695 |
| Panicum hallii | Chr09 | 3 | CH_pha_197 | 4 | 4 | 0.00000668753 |
| Populus trichocarpa | Chr14 | 3 | CH_ptr_200 | 5 | 5 | 0.0000000495313 |
| Populus trichocarpa | Chr02 | 3 | CH_ptr_292 | 4 | 4 | 0.0000117379 |
| Sorghum bicolor | Chr06 | 3 | CH_sbi_145 | 5 | 6 | 0.000000191301 |
| Secale cereale | GWHASIY00000002 | 3 | CH_sce_172 | 6 | 9 | 0.0000000193982 |
| Secale cereale | GWHASIY00000002 | 3 | CH_sce_198 | 5 | 5 | 0.0000000566394 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_420 | 7 | 14 | 0.00000000049068 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_799 | 5 | 10 | 0.00000364204 |
| Setaria italica | scaffold_9 | 3 | CH_sit_239 | 4 | 4 | 0.0000103648 |
| Solanum lycopersicum | SL4.0ch09 | 3 | CH_sly_540 | 3 | 3 | 0.000785977 |
| Solanum lycopersicum | SL4.0ch09 | 3 | CH_sly_541 | 3 | 3 | 0.000785977 |
| Solanum lycopersicum | SL4.0ch03 | 3 | CH_sly_542 | 3 | 3 | 0.000785977 |
| Solanum lycopersicum | SL4.0ch01 | 3 | CH_sly_97 | 6 | 8 | 0.000000000459908 |
| Setaria viridis | Chr_09 | 3 | CH_svi_250 | 4 | 4 | 0.00000711851 |
| Setaria viridis | Chr_07 | 3 | CH_svi_336 | 4 | 6 | 0.000106153 |
| Triticum aestivum | Chr6D | 3 | CH_tae_1043 | 4 | 5 | 0.0000900986 |
| Triticum aestivum | Chr2D | 3 | CH_tae_1183 | 4 | 6 | 0.000269519 |
| Triticum aestivum | Chr1D | 3 | CH_tae_908 | 4 | 4 | 0.0000180717 |
| Triticum dicoccoides | 4A | 3 | CH_tdi_317 | 4 | 4 | 0.00000955463 |
| Triticum dicoccoides | 4B | 3 | CH_tdi_318 | 4 | 4 | 0.00000955463 |
| Triticum turgidum | chr4B | 3 | CH_ttu_408 | 4 | 4 | 0.0000117373 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00002.1 | 3 | CH_zjn_101 | 4 | 5 | 0.0000225857 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00051.1 | 3 | CH_zjn_102 | 4 | 5 | 0.0000225857 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00004.1 | 3 | CH_zjn_201 | 4 | 8 | 0.000313927 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00003.1 | 3 | CH_zjn_78 | 4 | 4 | 0.00000452802 |
| Aegilops tauschii | 4D | 4 | CH_ata_184 | 4 | 4 | 0.00000650669 |
| Aegilops tauschii | 2D | 4 | CH_ata_69 | 6 | 7 | 0.000000000551252 |
| Amborella trichopoda | AmTr_v1.0_scaffold00010 | 4 | CH_atr_320 | 3 | 3 | 0.000665504 |
| Cenchrus purpureus | GWHAORA00000005 | 4 | CH_cpu_559 | 4 | 4 | 0.0000263002 |
| Cenchrus purpureus | GWHAORA00000014 | 4 | CH_cpu_560 | 4 | 4 | 0.0000263002 |
| Digitaria exilis | Dexi_CM05836_chr09B | 4 | CH_dex_354 | 4 | 4 | 0.00000784573 |
| Digitaria exilis | Dexi_CM05836_chr09A | 4 | CH_dex_418 | 4 | 5 | 0.0000391231 |
| Glycine max | Gm03 | 4 | CH_gma_170 | 6 | 9 | 0.0000000469656 |
| Glycine max | Gm10 | 4 | CH_gma_307 | 4 | 4 | 0.0000260648 |
| Glycine max | Gm19 | 4 | CH_gma_308 | 4 | 4 | 0.0000260648 |
| Glycine max | Gm03 | 4 | CH_gma_309 | 4 | 4 | 0.0000260648 |
| Glycine max | Gm13 | 4 | CH_gma_82 | 7 | 9 | 0.0000000000935748 |
| Hordeum vulgare | chr6H | 4 | CH_hvu_379 | 4 | 9 | 0.000330793 |
| Lolium perenne | Lp_chr4_0 | 4 | CH_lpe_120 | 6 | 17 | 0.00000002938 |
| Lolium perenne | Lp_chr2_0 | 4 | CH_lpe_201 | 4 | 5 | 0.00000368762 |
| Lolium perenne | Lp_chr6_0 | 4 | CH_lpe_456 | 4 | 15 | 0.000992033 |
| Oryza alta | GWHAZTO00000003 | 4 | CH_oal_324 | 4 | 4 | 0.00000304062 |
| Oryza sativa ssp. japonica | chr03 | 4 | CH_osa_310 | 4 | 7 | 0.00010996 |
| Phyllostachys edulis | hic_scaffold_3 | 4 | CH_ped_273 | 4 | 4 | 0.0000238695 |
| Phyllostachys edulis | hic_scaffold_21 | 4 | CH_ped_274 | 4 | 4 | 0.0000238695 |
| Panicum hallii | Chr09 | 4 | CH_pha_197 | 4 | 4 | 0.00000668753 |
| Populus trichocarpa | Chr14 | 4 | CH_ptr_200 | 5 | 5 | 0.0000000495313 |
| Populus trichocarpa | Chr02 | 4 | CH_ptr_292 | 4 | 4 | 0.0000117379 |
| Sorghum bicolor | Chr06 | 4 | CH_sbi_145 | 5 | 6 | 0.000000191301 |
| Secale cereale | GWHASIY00000002 | 4 | CH_sce_172 | 6 | 9 | 0.0000000193982 |
| Secale cereale | GWHASIY00000002 | 4 | CH_sce_198 | 5 | 5 | 0.0000000566394 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_420 | 7 | 14 | 0.00000000049068 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_799 | 5 | 10 | 0.00000364204 |
| Setaria italica | scaffold_9 | 4 | CH_sit_239 | 4 | 4 | 0.0000103648 |
| Solanum lycopersicum | SL4.0ch09 | 4 | CH_sly_540 | 3 | 3 | 0.000785977 |
| Solanum lycopersicum | SL4.0ch09 | 4 | CH_sly_541 | 3 | 3 | 0.000785977 |
| Solanum lycopersicum | SL4.0ch03 | 4 | CH_sly_542 | 3 | 3 | 0.000785977 |
| Solanum lycopersicum | SL4.0ch01 | 4 | CH_sly_97 | 6 | 8 | 0.000000000459908 |
| Setaria viridis | Chr_09 | 4 | CH_svi_250 | 4 | 4 | 0.00000711851 |
| Setaria viridis | Chr_07 | 4 | CH_svi_336 | 4 | 6 | 0.000106153 |
| Triticum aestivum | Chr6D | 4 | CH_tae_1043 | 4 | 5 | 0.0000900986 |
| Triticum aestivum | Chr2D | 4 | CH_tae_1183 | 4 | 6 | 0.000269519 |
| Triticum aestivum | Chr1D | 4 | CH_tae_908 | 4 | 4 | 0.0000180717 |
| Triticum dicoccoides | 4A | 4 | CH_tdi_317 | 4 | 4 | 0.00000955463 |
| Triticum dicoccoides | 4B | 4 | CH_tdi_318 | 4 | 4 | 0.00000955463 |
| Triticum turgidum | chr4B | 4 | CH_ttu_408 | 4 | 4 | 0.0000117373 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00002.1 | 4 | CH_zjn_101 | 4 | 5 | 0.0000225857 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00051.1 | 4 | CH_zjn_102 | 4 | 5 | 0.0000225857 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00004.1 | 4 | CH_zjn_201 | 4 | 8 | 0.000313927 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00003.1 | 4 | CH_zjn_78 | 4 | 4 | 0.00000452802 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009871 | jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway | 18 |
| GO:0010104 | regulation of ethylene-activated signaling pathway | 2 |
| GO:0010105 | negative regulation of ethylene-activated signaling pathway | 12 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |