Functional clusters
Information
- Type Gene Ontology
- Description regulation of defense response to oomycetes
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG14 | 3 | CH_aco_40 | 3 | 6 | 0.000000825464 |
| Arabidopsis thaliana | Chr3 | 3 | CH_ath_158 | 4 | 12 | 0.0000000249448 |
| Arabidopsis thaliana | Chr2 | 3 | CH_ath_99 | 6 | 80 | 0.000000000222298 |
| Brachypodium distachyon | Bd2 | 3 | CH_bdi_39 | 5 | 10 | 0.0000000000068837 |
| Dioscorea dumetorum | contig199 | 3 | CH_ddu_198 | 2 | 2 | 0.000207268 |
| Eragrostis curvula | Contig4 | 3 | CH_ecu_304 | 4 | 13 | 0.0000000412132 |
| Glycine max | Gm14 | 3 | CH_gma_137 | 5 | 36 | 0.00000000462944 |
| Glycine max | Gm14 | 3 | CH_gma_61 | 5 | 8 | 0.000000000000690181 |
| Lolium perenne | Lp_chr5_0 | 3 | CH_lpe_185 | 3 | 5 | 0.00000130154 |
| Magnolia biondii | Chr14 | 3 | CH_mbi_39 | 9 | 78 | 3.50742e-17 |
| Magnolia biondii | Chr14 | 3 | CH_mbi_677 | 3 | 15 | 0.00073034 |
| Miscanthus sinensis | Chr05 | 3 | CH_msi_21 | 9 | 25 | 6.71228e-20 |
| Miscanthus sinensis | Chr08 | 3 | CH_msi_360 | 3 | 5 | 0.0000698556 |
| Miscanthus sinensis | Chr07 | 3 | CH_msi_80 | 5 | 9 | 0.000000000172355 |
| Oryza sativa Kitaake | Chr12 | 3 | CH_osak_148 | 5 | 24 | 0.0000000369589 |
| Oryza sativa ssp. japonica | chr12 | 3 | CH_osa_123 | 5 | 32 | 0.0000000350543 |
| Oryza sativa ssp. japonica | chr01 | 3 | CH_osa_25 | 7 | 29 | 0.0000000000000170884 |
| Phyllostachys edulis | hic_scaffold_14 | 3 | CH_ped_239 | 3 | 10 | 0.0000059741 |
| Panicum hallii | Chr02 | 3 | CH_pha_87 | 5 | 18 | 0.00000000219315 |
| Populus trichocarpa | Chr12 | 3 | CH_ptr_10 | 19 | 54 | 2.08329e-37 |
| Populus trichocarpa | Chr10 | 3 | CH_ptr_356 | 3 | 3 | 0.000104363 |
| Populus trichocarpa | Chr12 | 3 | CH_ptr_8 | 17 | 30 | 1.47663e-37 |
| Sorghum bicolor | Chr08 | 3 | CH_sbi_415 | 3 | 14 | 0.000536026 |
| Setaria italica | scaffold_2 | 3 | CH_sit_115 | 4 | 5 | 0.00000000400309 |
| Setaria italica | scaffold_6 | 3 | CH_sit_377 | 3 | 11 | 0.000275372 |
| Solanum lycopersicum | SL4.0ch12 | 3 | CH_sly_113 | 4 | 9 | 0.00000000267401 |
| Saccharum spontaneum | Chr4A | 3 | CH_ssp_296 | 4 | 16 | 0.000000655154 |
| Saccharum spontaneum | Chr3B | 3 | CH_ssp_545 | 3 | 6 | 0.0000302273 |
| Saccharum spontaneum | Chr3A | 3 | CH_ssp_65 | 5 | 6 | 0.000000000000490612 |
| Setaria viridis | Chr_06 | 3 | CH_svi_386 | 3 | 15 | 0.000192372 |
| Triticum aestivum | Chr3B | 3 | CH_tae_152 | 8 | 57 | 0.00000000000000579278 |
| Triticum aestivum | Chr3B | 3 | CH_tae_262 | 6 | 21 | 0.0000000000146077 |
| Triticum aestivum | Chr3A | 3 | CH_tae_724 | 4 | 13 | 0.00000156756 |
| Triticum turgidum | chr3B | 3 | CH_ttu_142 | 5 | 13 | 0.000000000390649 |
| Triticum turgidum | chr3B | 3 | CH_ttu_178 | 4 | 5 | 0.00000000486473 |
| Triticum turgidum | chr3B | 3 | CH_ttu_343 | 4 | 17 | 0.00000230824 |
| Zea mays B73 | 10 | 3 | CH_zma_285 | 2 | 2 | 0.000306788 |
| Ananas comosus | LG14 | 4 | CH_aco_40 | 3 | 6 | 0.000000825464 |
| Arabidopsis thaliana | Chr3 | 4 | CH_ath_158 | 4 | 12 | 0.0000000249448 |
| Arabidopsis thaliana | Chr2 | 4 | CH_ath_99 | 6 | 80 | 0.000000000222298 |
| Brachypodium distachyon | Bd2 | 4 | CH_bdi_39 | 5 | 10 | 0.0000000000068837 |
| Dioscorea dumetorum | contig199 | 4 | CH_ddu_198 | 2 | 2 | 0.000207268 |
| Eragrostis curvula | Contig4 | 4 | CH_ecu_304 | 4 | 13 | 0.0000000412132 |
| Glycine max | Gm14 | 4 | CH_gma_137 | 5 | 36 | 0.00000000462944 |
| Glycine max | Gm14 | 4 | CH_gma_61 | 5 | 8 | 0.000000000000690181 |
| Lolium perenne | Lp_chr5_0 | 4 | CH_lpe_185 | 3 | 5 | 0.00000130154 |
| Magnolia biondii | Chr14 | 4 | CH_mbi_39 | 9 | 78 | 3.50742e-17 |
| Magnolia biondii | Chr14 | 4 | CH_mbi_677 | 3 | 15 | 0.00073034 |
| Miscanthus sinensis | Chr05 | 4 | CH_msi_21 | 9 | 25 | 6.71228e-20 |
| Miscanthus sinensis | Chr08 | 4 | CH_msi_360 | 3 | 5 | 0.0000698556 |
| Miscanthus sinensis | Chr07 | 4 | CH_msi_80 | 5 | 9 | 0.000000000172355 |
| Oryza sativa Kitaake | Chr12 | 4 | CH_osak_148 | 5 | 24 | 0.0000000369589 |
| Oryza sativa ssp. japonica | chr12 | 4 | CH_osa_123 | 5 | 32 | 0.0000000350543 |
| Oryza sativa ssp. japonica | chr01 | 4 | CH_osa_25 | 7 | 29 | 0.0000000000000170884 |
| Phyllostachys edulis | hic_scaffold_14 | 4 | CH_ped_239 | 3 | 10 | 0.0000059741 |
| Panicum hallii | Chr02 | 4 | CH_pha_87 | 5 | 18 | 0.00000000219315 |
| Populus trichocarpa | Chr12 | 4 | CH_ptr_10 | 19 | 54 | 2.08329e-37 |
| Populus trichocarpa | Chr10 | 4 | CH_ptr_356 | 3 | 3 | 0.000104363 |
| Populus trichocarpa | Chr12 | 4 | CH_ptr_8 | 17 | 30 | 1.47663e-37 |
| Sorghum bicolor | Chr08 | 4 | CH_sbi_415 | 3 | 14 | 0.000536026 |
| Setaria italica | scaffold_2 | 4 | CH_sit_115 | 4 | 5 | 0.00000000400309 |
| Setaria italica | scaffold_6 | 4 | CH_sit_377 | 3 | 11 | 0.000275372 |
| Solanum lycopersicum | SL4.0ch12 | 4 | CH_sly_113 | 4 | 9 | 0.00000000267401 |
| Saccharum spontaneum | Chr4A | 4 | CH_ssp_296 | 4 | 16 | 0.000000655154 |
| Saccharum spontaneum | Chr3B | 4 | CH_ssp_545 | 3 | 6 | 0.0000302273 |
| Saccharum spontaneum | Chr3A | 4 | CH_ssp_65 | 5 | 6 | 0.000000000000490612 |
| Setaria viridis | Chr_06 | 4 | CH_svi_386 | 3 | 15 | 0.000192372 |
| Triticum aestivum | Chr3B | 4 | CH_tae_152 | 8 | 57 | 0.00000000000000579278 |
| Triticum aestivum | Chr3B | 4 | CH_tae_262 | 6 | 21 | 0.0000000000146077 |
| Triticum aestivum | Chr3A | 4 | CH_tae_724 | 4 | 13 | 0.00000156756 |
| Triticum turgidum | chr3B | 4 | CH_ttu_142 | 5 | 13 | 0.000000000390649 |
| Triticum turgidum | chr3B | 4 | CH_ttu_178 | 4 | 5 | 0.00000000486473 |
| Triticum turgidum | chr3B | 4 | CH_ttu_343 | 4 | 17 | 0.00000230824 |
| Zea mays B73 | 10 | 4 | CH_zma_285 | 2 | 2 | 0.000306788 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:1902289 | negative regulation of defense response to oomycetes | 10 |
| GO:1902290 | positive regulation of defense response to oomycetes | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |