Functional clusters

Information

  • Type MapMan
  • Description Protein translocation

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC06 1 CH_bca_1071 5 12 0.000659979
Pisum sativum chr5LG3 1 CH_psa_253 5 11 0.000107088
Brassica carinata ChrC06 2 CH_bca_1071 5 12 0.000659979
Pisum sativum chr5LG3 2 CH_psa_253 5 11 0.000107088

Available child term results

Ontology identifier Description Number of clusters
23.1.1.1 Protein translocation.chloroplast.outer envelope insertion system.chaperone (AKR2) 22
23.1.2 Protein translocation.chloroplast.outer envelope TOC translocation system 4
23.1.2.1 Protein translocation.chloroplast.outer envelope TOC translocation system.translocation channel (Toc75-III) 2
23.1.2.2 Protein translocation.chloroplast.outer envelope TOC translocation system.receptor GTPase (Toc90/120/132/159) 18
23.1.2.3 Protein translocation.chloroplast.outer envelope TOC translocation system.receptor GTPase (Toc33/Toc34) 8
23.1.2.5 Protein translocation.chloroplast.outer envelope TOC translocation system.regulatory factor (Toc12) 12
23.1.2.6 Protein translocation.chloroplast.outer envelope TOC translocation system.regulatory kinase (KOG1) 2
23.1.3 Protein translocation.chloroplast.inner envelope TIC translocation system 6
23.1.3.1.1 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.component Tic20-I/IV 16
23.1.3.1.3 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.component Tic100 12
23.1.3.2 Protein translocation.chloroplast.inner envelope TIC translocation system.translocation channel (Tic110) 22
23.1.3.3 Protein translocation.chloroplast.inner envelope TIC translocation system.co-chaperone (Tic40) 8
23.1.3.4.1.2 Protein translocation.chloroplast.inner envelope TIC translocation system.AAA-ATPase motor complex.FtsH12-FtsHi subcomplex.component FtsHi 10
23.1.3.4.2 Protein translocation.chloroplast.inner envelope TIC translocation system.AAA-ATPase motor complex.regulatory component YCF2 31
23.1.3.4.3 Protein translocation.chloroplast.inner envelope TIC translocation system.AAA-ATPase motor complex.malate dehydrogenase component 4
23.1.3.5.1 Protein translocation.chloroplast.inner envelope TIC translocation system.redox regulon complex.component Tic32 73
23.1.3.5.2 Protein translocation.chloroplast.inner envelope TIC translocation system.redox regulon complex.component Tic55 6
23.1.3.6 Protein translocation.chloroplast.inner envelope TIC translocation system.regulatory factor (Tic22) 14
23.1.3.7 Protein translocation.chloroplast.inner envelope TIC translocation system.TOC-TIC interconnecting protein (Tic236) 7
23.1.4.1 Protein translocation.chloroplast.inner envelope Sec2 post-import insertion system.component SecA2 2
23.1.4.2 Protein translocation.chloroplast.inner envelope Sec2 post-import insertion system.component SecY2 2
23.1.4.3 Protein translocation.chloroplast.inner envelope Sec2 post-import insertion system.component SecE2 10
23.1.5.2 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.component SecY1 2
23.1.5.3 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.component SecE1 4
23.1.6.2 Protein translocation.chloroplast.thylakoid membrane Tat translocation system.component Tha4 2
23.1.7.1 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.TIC-to-SRP handover factor (LTD) 4
23.1.7.3.2 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.SRP43-SRP54 transit complex.component cpSRP54 1
23.1.7.4 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.SRP receptor protein (cpFtsY) 6
23.1.7.5 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.membrane insertase (ALB3/ALB4) 8
23.2 Protein translocation.mitochondrion 2
23.2.1.2 Protein translocation.mitochondrion.outer mitochondrion membrane TOM translocation system.component Tom6 8
23.2.1.3 Protein translocation.mitochondrion.outer mitochondrion membrane TOM translocation system.component Tom7 11
23.2.1.4 Protein translocation.mitochondrion.outer mitochondrion membrane TOM translocation system.component Tom22 14
23.2.1.5 Protein translocation.mitochondrion.outer mitochondrion membrane TOM translocation system.component Tom20 20
23.2.1.6 Protein translocation.mitochondrion.outer mitochondrion membrane TOM translocation system.component Tom40 9
23.2.1.7 Protein translocation.mitochondrion.outer mitochondrion membrane TOM translocation system.component OM64 2
23.2.2.1 Protein translocation.mitochondrion.outer mitochondrion membrane SAM insertion system.component SAM/Tob55 6
23.2.2.2 Protein translocation.mitochondrion.outer mitochondrion membrane SAM insertion system.component Metaxin 6
23.2.3 Protein translocation.mitochondrion.inner mitochondrion membrane TIM translocation system 4
23.2.3.1 Protein translocation.mitochondrion.inner mitochondrion membrane TIM translocation system.component Pam16 6
23.2.3.2 Protein translocation.mitochondrion.inner mitochondrion membrane TIM translocation system.component Pam18 8
23.2.3.3 Protein translocation.mitochondrion.inner mitochondrion membrane TIM translocation system.component Tim44 6
23.2.3.4 Protein translocation.mitochondrion.inner mitochondrion membrane TIM translocation system.component Tim17 32
23.2.3.5 Protein translocation.mitochondrion.inner mitochondrion membrane TIM translocation system.component Tim23 8
23.2.3.6 Protein translocation.mitochondrion.inner mitochondrion membrane TIM translocation system.component Tim21 8
23.2.3.8 Protein translocation.mitochondrion.inner mitochondrion membrane TIM translocation system.component B14-7 6
23.2.4 Protein translocation.mitochondrion.inner mitochondrion membrane TIM22 insertion system 2
23.2.4.1 Protein translocation.mitochondrion.inner mitochondrion membrane TIM22 insertion system.component Tim22 4
23.2.4.4 Protein translocation.mitochondrion.inner mitochondrion membrane TIM22 insertion system.component Tim10 4
23.2.5.1 Protein translocation.mitochondrion.inner mitochondrion membrane presequence-dependent insertion system.membrane insertase (Oxa1) 8
23.3.1.1 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex 2
23.3.1.1.1 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex.component SRP19 4
23.3.1.1.2 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex.component SRP72 24
23.3.1.1.3 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex.component SRP9 2
23.3.1.1.4 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex.component SRP14 4
23.3.1.1.5 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex.component SRP54 12
23.3.1.1.6 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex.component SRP68 8
23.3.1.2 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) receptor complex 2
23.3.1.2.1 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) receptor complex.component SR-alpha 8
23.3.1.2.2 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) receptor complex.component SR-beta 8
23.3.1.3.1 Protein translocation.endoplasmic reticulum.co-translational insertion system.Sec61 subcomplex.subunit alpha 16
23.3.1.3.2 Protein translocation.endoplasmic reticulum.co-translational insertion system.Sec61 subcomplex.subunit beta 10
23.3.1.3.3 Protein translocation.endoplasmic reticulum.co-translational insertion system.Sec61 subcomplex.subunit gamma 4
23.3.1.4 Protein translocation.endoplasmic reticulum.co-translational insertion system.accessory component Sec62 8
23.3.1.5 Protein translocation.endoplasmic reticulum.co-translational insertion system.accessory component Sec63 14
23.3.1.6 Protein translocation.endoplasmic reticulum.co-translational insertion system.accessory component TPR7 16
23.3.2 Protein translocation.endoplasmic reticulum.GET post-translational insertion system 2
23.3.2.2 Protein translocation.endoplasmic reticulum.GET post-translational insertion system.component GET1 10
23.3.2.3 Protein translocation.endoplasmic reticulum.GET post-translational insertion system.GET4-GET5 scaffold subcomplex 2
23.3.2.3.1 Protein translocation.endoplasmic reticulum.GET post-translational insertion system.GET4-GET5 scaffold subcomplex.GET3-recruitment component GET4 4
23.3.2.3.2 Protein translocation.endoplasmic reticulum.GET post-translational insertion system.GET4-GET5 scaffold subcomplex.component SGT2 8
23.4.1.1.1 Protein translocation.peroxisome.importomer translocation system.cargo-receptor system.component Pex5 20
23.4.1.1.2 Protein translocation.peroxisome.importomer translocation system.cargo-receptor system.component Pex7 2
23.4.1.2.1 Protein translocation.peroxisome.importomer translocation system.cargo-receptor docking complex.component Pex13 8
23.4.1.2.2 Protein translocation.peroxisome.importomer translocation system.cargo-receptor docking complex.component Pex14 12
23.4.1.3.1 Protein translocation.peroxisome.importomer translocation system.receptor monoubiquitination system.ubiquitin conjugating component Pex4 4
23.4.1.3.2 Protein translocation.peroxisome.importomer translocation system.receptor monoubiquitination system.ubiquitin ligase component Pex12 4
23.4.1.3.3 Protein translocation.peroxisome.importomer translocation system.receptor monoubiquitination system.membrane anchor component Pex22 10
23.4.1.4.1 Protein translocation.peroxisome.importomer translocation system.receptor polyubiquitination system.component Pex2 2
23.4.1.4.2 Protein translocation.peroxisome.importomer translocation system.receptor polyubiquitination system.component Pex10 8
23.4.1.5.1.1 Protein translocation.peroxisome.importomer translocation system.receptor export system.Pex1-Pex6 subcomplex.component Pex1 16
23.4.1.5.1.2 Protein translocation.peroxisome.importomer translocation system.receptor export system.Pex1-Pex6 subcomplex.component Pex6 6
23.4.1.5.2 Protein translocation.peroxisome.importomer translocation system.receptor export system.PEX1-PEX6 membrane anchor component PEX26 17
23.4.2.1 Protein translocation.peroxisome.PEX19 insertion system.chaperone component PEX19 12
23.4.2.2 Protein translocation.peroxisome.PEX19 insertion system.membrane anchor component PEX3 12
23.4.2.3 Protein translocation.peroxisome.PEX19 insertion system.PEX3-recruiting component PEX16 9
23.5.1 Protein translocation.nucleus.nucleocytoplasmic transport 2
23.5.1.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC) 2
23.5.1.1.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring 2
23.5.1.1.1.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP160) 8
23.5.1.1.1.10 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (ELYS) 10
23.5.1.1.1.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP107) 8
23.5.1.1.1.3 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP133) 2
23.5.1.1.1.5 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP75/85) 6
23.5.1.1.1.6 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP43) 6
23.5.1.1.1.7 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (SEH1) 2
23.5.1.1.1.8 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (ALADIN) 24
23.5.1.1.1.9 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (RAE1) 5
23.5.1.1.2.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (NUP205) 2
23.5.1.1.2.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (NUP188) 22
23.5.1.1.2.3 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (NUP155) 14
23.5.1.1.2.4 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (CPR5) 12
23.5.1.1.3.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.scaffold nucleoporin (NUP93) 15
23.5.1.1.3.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.scaffold nucleoporin (NUP88) 16
23.5.1.1.4.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).transmembrane ring.nucleoporin (GP210) 16
23.5.1.1.4.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).transmembrane ring.nucleoporin (NDC1) 9
23.5.1.1.5.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.nucleoporin (NUP50) 6
23.5.1.1.5.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.nucleoporin (NUA) 16
23.5.1.1.5.3 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.nucleoporin (NUP1/NUP136) 11
23.5.1.1.6.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP98) 15
23.5.1.1.6.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP62) 16
23.5.1.1.6.3 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP58) 10
23.5.1.1.6.4 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP54) 8
23.5.1.1.6.5 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP35) 5
23.5.1.1.7.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.nucleoporin (NUP214) 37
23.5.1.1.7.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.nucleoporin (CG1) 6
23.5.1.2 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities 10
23.5.1.2.1 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (IMPA) 29
23.5.1.2.10 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.export karyopherin (XPO2) 12
23.5.1.2.11 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.export karyopherin (XPO3/XPOT) 10
23.5.1.2.12 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.transport karyopherin (XPO4) 10
23.5.1.2.13 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.transport karyopherin (XPO5) 2
23.5.1.2.14 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.export karyopherin (XPO7) 24
23.5.1.2.15 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.transport karyopherin (TNPO3) 6
23.5.1.2.16 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.transport karyopherin (PLANTKAP) 9
23.5.1.2.2 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (IMB1) 32
23.5.1.2.3 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (IMB2) 8
23.5.1.2.4 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (IMB3) 28
23.5.1.2.6 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (IMB5) 10
23.5.1.2.7 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (KA120) 14
23.5.1.2.8 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (SAD2/EMA1) 10
23.5.1.2.9 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.export karyopherin (XPO1) 8
23.5.1.3 Protein translocation.nucleus.nucleocytoplasmic transport.GTPase (Ran) 77
23.5.1.4 Protein translocation.nucleus.nucleocytoplasmic transport.Ran-activating protein (Ran-GAP) 4
23.5.1.5 Protein translocation.nucleus.nucleocytoplasmic transport.Ran-activation accessory protein (RanBP1) 16
23.5.1.6 Protein translocation.nucleus.nucleocytoplasmic transport.RanGDP-specific nuclear import factor (NTF2) 20
23.6.2 Protein translocation.plasmodesmata intercellular trafficking.regulatory protein (MPB2C) 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001