Functional clusters

Information

  • Type MapMan
  • Description Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.scaffold nucleoporin (NUP93)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group21 1 CH_ach_166 2 4 0.00032591
Cardamine hirsuta Chr5 1 CH_chi_350 2 2 0.000414723
Magnolia biondii Chr13 1 CH_mbi_318 2 2 0.0000485661
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_769 2 3 0.0000487151
Sapria himalayana scaffold140_625291 1 CH_shi_207 3 12 0.000489683
Sapria himalayana scaffold23_8152026 1 CH_shi_51 3 3 0.00000223157
Solanum tuberosum ST4.03ch00 1 CH_stu_452 2 2 0.000153736
Actinidia chinensis Lachesis_group21 2 CH_ach_166 2 4 0.00032591
Cardamine hirsuta Chr5 2 CH_chi_350 2 2 0.000414723
Eucalyptus grandis Chr11 2 CH_egr_322 5 56 0.00000000201178
Magnolia biondii Chr13 2 CH_mbi_318 2 2 0.0000485661
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_769 2 3 0.0000487151
Sapria himalayana scaffold140_625291 2 CH_shi_207 3 12 0.000489683
Sapria himalayana scaffold23_8152026 2 CH_shi_51 3 3 0.00000223157
Solanum tuberosum ST4.03ch00 2 CH_stu_452 2 2 0.000153736

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001