Functional clusters

Information

  • Type MapMan
  • Description Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_434 3 3 0.0000185229
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_434 3 3 0.0000185229

Available child term results

Ontology identifier Description Number of clusters
23.5.1.1.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring 2
23.5.1.1.1.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP160) 8
23.5.1.1.1.10 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (ELYS) 10
23.5.1.1.1.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP107) 8
23.5.1.1.1.3 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP133) 2
23.5.1.1.1.5 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP75/85) 6
23.5.1.1.1.6 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP43) 6
23.5.1.1.1.7 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (SEH1) 2
23.5.1.1.1.8 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (ALADIN) 24
23.5.1.1.1.9 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (RAE1) 5
23.5.1.1.2.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (NUP205) 2
23.5.1.1.2.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (NUP188) 22
23.5.1.1.2.3 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (NUP155) 14
23.5.1.1.2.4 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (CPR5) 12
23.5.1.1.3.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.scaffold nucleoporin (NUP93) 15
23.5.1.1.3.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.scaffold nucleoporin (NUP88) 16
23.5.1.1.4.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).transmembrane ring.nucleoporin (GP210) 16
23.5.1.1.4.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).transmembrane ring.nucleoporin (NDC1) 9
23.5.1.1.5.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.nucleoporin (NUP50) 6
23.5.1.1.5.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.nucleoporin (NUA) 16
23.5.1.1.5.3 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.nucleoporin (NUP1/NUP136) 11
23.5.1.1.6.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP98) 15
23.5.1.1.6.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP62) 16
23.5.1.1.6.3 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP58) 10
23.5.1.1.6.4 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP54) 8
23.5.1.1.6.5 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP35) 5
23.5.1.1.7.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.nucleoporin (NUP214) 37
23.5.1.1.7.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.nucleoporin (CG1) 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001