Functional clusters

Information

  • Type MapMan
  • Description Protein translocation.nucleus.nucleocytoplasmic transport

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Gossypium hirsutum D01 1 CH_ghi_415 4 5 0.0000137597
Gossypium hirsutum D01 2 CH_ghi_415 4 5 0.0000137597

Available child term results

Ontology identifier Description Number of clusters
23.5.1.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC) 2
23.5.1.1.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring 2
23.5.1.1.1.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP160) 8
23.5.1.1.1.10 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (ELYS) 10
23.5.1.1.1.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP107) 8
23.5.1.1.1.3 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP133) 2
23.5.1.1.1.5 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP75/85) 6
23.5.1.1.1.6 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP43) 6
23.5.1.1.1.7 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (SEH1) 2
23.5.1.1.1.8 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (ALADIN) 24
23.5.1.1.1.9 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (RAE1) 5
23.5.1.1.2.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (NUP205) 2
23.5.1.1.2.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (NUP188) 22
23.5.1.1.2.3 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (NUP155) 14
23.5.1.1.2.4 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (CPR5) 12
23.5.1.1.3.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.scaffold nucleoporin (NUP93) 15
23.5.1.1.3.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.scaffold nucleoporin (NUP88) 16
23.5.1.1.4.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).transmembrane ring.nucleoporin (GP210) 16
23.5.1.1.4.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).transmembrane ring.nucleoporin (NDC1) 9
23.5.1.1.5.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.nucleoporin (NUP50) 6
23.5.1.1.5.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.nucleoporin (NUA) 16
23.5.1.1.5.3 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.nucleoporin (NUP1/NUP136) 11
23.5.1.1.6.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP98) 15
23.5.1.1.6.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP62) 16
23.5.1.1.6.3 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP58) 10
23.5.1.1.6.4 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP54) 8
23.5.1.1.6.5 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP35) 5
23.5.1.1.7.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.nucleoporin (NUP214) 37
23.5.1.1.7.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.nucleoporin (CG1) 6
23.5.1.2 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities 10
23.5.1.2.1 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (IMPA) 29
23.5.1.2.10 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.export karyopherin (XPO2) 12
23.5.1.2.11 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.export karyopherin (XPO3/XPOT) 10
23.5.1.2.12 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.transport karyopherin (XPO4) 10
23.5.1.2.13 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.transport karyopherin (XPO5) 2
23.5.1.2.14 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.export karyopherin (XPO7) 24
23.5.1.2.15 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.transport karyopherin (TNPO3) 6
23.5.1.2.16 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.transport karyopherin (PLANTKAP) 9
23.5.1.2.2 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (IMB1) 32
23.5.1.2.3 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (IMB2) 8
23.5.1.2.4 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (IMB3) 28
23.5.1.2.6 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (IMB5) 10
23.5.1.2.7 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (KA120) 14
23.5.1.2.8 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (SAD2/EMA1) 10
23.5.1.2.9 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.export karyopherin (XPO1) 8
23.5.1.3 Protein translocation.nucleus.nucleocytoplasmic transport.GTPase (Ran) 77
23.5.1.4 Protein translocation.nucleus.nucleocytoplasmic transport.Ran-activating protein (Ran-GAP) 4
23.5.1.5 Protein translocation.nucleus.nucleocytoplasmic transport.Ran-activation accessory protein (RanBP1) 16
23.5.1.6 Protein translocation.nucleus.nucleocytoplasmic transport.RanGDP-specific nuclear import factor (NTF2) 20

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001