Functional clusters
Information
- Type MapMan
- Description Protein translocation.chloroplast.inner envelope TIC translocation system.AAA-ATPase motor complex.regulatory component YCF2
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 1 | CH_amhyb_44 | 5 | 51 | 0.000000220725 |
| Aquilegia oxysepala | CHR03 | 1 | CH_aox_155 | 2 | 2 | 0.0000801989 |
| Brassica napus | C09 | 1 | CH_bna_161 | 3 | 3 | 0.0000000180685 |
| Brassica oleracea | Boleracea_scaffold_47 | 1 | CH_bol_151 | 3 | 3 | 0.00000182697 |
| Brassica oleracea | Boleracea_scaffold_29 | 1 | CH_bol_152 | 5 | 73 | 0.0000019641 |
| Capsicum annuum | PGAv.1.6.scaffold1298 | 1 | CH_can_190 | 4 | 10 | 0.00000258855 |
| Citrullus lanatus | CG_Chr02 | 1 | CH_cla_193 | 2 | 4 | 0.000532222 |
| Helianthus annuus | HanXRQChr11 | 1 | CH_han_177 | 4 | 4 | 0.00000000303831 |
| Helianthus annuus | HanXRQChr11 | 1 | CH_han_346 | 3 | 3 | 0.00000655185 |
| Hydrangea macrophylla | Hma1.2p1_0192F.1 | 1 | CH_hma_226 | 2 | 4 | 0.000111086 |
| Lupinus albus | Lalb_Chr13 | 1 | CH_lal_73 | 4 | 8 | 0.0000000216884 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_157 | 5 | 44 | 0.00000000584422 |
| Nicotiana tabacum | Nitab4.5_0001761 | 1 | CH_nta_19 | 5 | 16 | 0.00000000374696 |
| Nicotiana tabacum | Nitab4.5_0000223 | 1 | CH_nta_64 | 3 | 3 | 0.00000397345 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_248 | 3 | 3 | 0.0000000476781 |
| Utricularia gibba | unitig_91 | 1 | CH_ugi_84 | 4 | 41 | 0.0000018003 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 2 | CH_amhyb_44 | 5 | 51 | 0.000000220725 |
| Aquilegia oxysepala | CHR03 | 2 | CH_aox_155 | 2 | 2 | 0.0000801989 |
| Brassica oleracea | Boleracea_scaffold_47 | 2 | CH_bol_151 | 3 | 3 | 0.00000182697 |
| Brassica oleracea | Boleracea_scaffold_29 | 2 | CH_bol_152 | 5 | 73 | 0.0000019641 |
| Capsicum annuum | PGAv.1.6.scaffold1298 | 2 | CH_can_190 | 4 | 10 | 0.00000258855 |
| Citrullus lanatus | CG_Chr02 | 2 | CH_cla_193 | 2 | 4 | 0.000532222 |
| Helianthus annuus | HanXRQChr11 | 2 | CH_han_177 | 4 | 4 | 0.00000000303831 |
| Helianthus annuus | HanXRQChr11 | 2 | CH_han_346 | 3 | 3 | 0.00000655185 |
| Hydrangea macrophylla | Hma1.2p1_0192F.1 | 2 | CH_hma_226 | 2 | 4 | 0.000111086 |
| Lupinus albus | Lalb_Chr13 | 2 | CH_lal_73 | 4 | 8 | 0.0000000216884 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_157 | 5 | 44 | 0.00000000584422 |
| Nicotiana tabacum | Nitab4.5_0001761 | 2 | CH_nta_19 | 5 | 16 | 0.00000000374696 |
| Nicotiana tabacum | Nitab4.5_0000223 | 2 | CH_nta_64 | 3 | 3 | 0.00000397345 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_248 | 3 | 3 | 0.0000000476781 |
| Utricularia gibba | unitig_91 | 2 | CH_ugi_84 | 4 | 41 | 0.0000018003 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |