Functional clusters

Information

  • Type MapMan
  • Description Protein translocation.chloroplast.inner envelope TIC translocation system.redox regulon complex.component Tic32

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_11560_HRSCAF_11609 1 CH_ama_90 2 2 0.000258665
Arabidopsis thaliana Chr4 1 CH_ath_268 2 2 0.0000859476
Coffea canephora chr2 1 CH_ccan_85 3 18 0.000000184997
Citrus clementina scaffold_9 1 CH_ccl_129 3 4 0.0000000403746
Carpinus fangiana Cfa05 1 CH_cfa_298 2 2 0.000227204
Cucumis melo chr09 1 CH_cme_182 2 2 0.0000667111
Carica papaya supercontig_74 1 CH_cpa_367 2 3 0.000855527
Chenopodium quinoa C_Quinoa_Scaffold_1783 1 CH_cqu_363 2 2 0.000142146
Cucumis sativus L. chr5 1 CH_csa_260 2 2 0.000250428
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_478 2 2 0.000673083
Fragaria vesca Fvb5 1 CH_fve_42 4 4 0.0000000000030669
Gossypium hirsutum A03 1 CH_ghi_157 4 9 0.000000000906451
Glycine max Gm09 1 CH_gma_103 4 6 0.00000000121773
Gossypium raimondii Chr03 1 CH_gra_454 2 4 0.000964906
Helianthus annuus HanXRQChr03 1 CH_han_171 4 7 0.0000000019988
Hydrangea macrophylla Hma1.2p1_0227F.1 1 CH_hma_322 2 3 0.000333241
Lonicera japonica GWHAAZE00000008 1 CH_lonja_268 3 8 0.00000301162
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_276 3 8 0.00000776377
Malus domestica Chr07 1 CH_mdo_234 3 6 0.000000431351
Manihot esculenta Chromosome06 1 CH_mes_415 2 2 0.000366379
Medicago truncatula chr1 1 CH_mtr_170 4 8 0.000000000218442
Punica granatum NC_045127.1 1 CH_pgr_127 3 4 0.000000337802
Punica granatum NC_045130.1 1 CH_pgr_360 2 2 0.000750356
Prunus persica Pp05 1 CH_ppe_198 3 5 0.000000333845
Papaver somniferum NC_039365.1 1 CH_pso_424 3 17 0.0000620328
Papaver somniferum NC_039361.1 1 CH_pso_716 3 41 0.000970814
Populus trichocarpa Chr03 1 CH_ptr_496 2 2 0.000578001
Phaseolus vulgaris Chr04 1 CH_pvu_49 5 7 0.000000000000096386
Quercus lobata 9 1 CH_qlo_887 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_96 6 36 0.000000000000375052
Solanum lycopersicum SL4.0ch03 1 CH_sly_84 4 5 0.0000000000454957
Solanum pennellii Spenn-ch03 1 CH_spe_101 3 3 0.00000000296764
Solanum tuberosum ST4.03ch03 1 CH_stu_181 3 5 0.000000157555
Trifolium pratense Tp57577_TGAC_v2_LG1 1 CH_tpr_311 2 2 0.000227092
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_62 4 6 0.000000000180531
Vitis vinifera chr16 1 CH_vvi_136 3 3 0.0000000347148
Avicennia marina ScioBoG_11560_HRSCAF_11609 2 CH_ama_90 2 2 0.000258665
Arabidopsis thaliana Chr4 2 CH_ath_268 2 2 0.0000859476
Coffea canephora chr2 2 CH_ccan_85 3 18 0.000000184997
Citrus clementina scaffold_9 2 CH_ccl_129 3 4 0.0000000403746
Carpinus fangiana Cfa05 2 CH_cfa_298 2 2 0.000227204
Cucumis melo chr09 2 CH_cme_182 2 2 0.0000667111
Carica papaya supercontig_74 2 CH_cpa_367 2 3 0.000855527
Chenopodium quinoa C_Quinoa_Scaffold_1783 2 CH_cqu_363 2 2 0.000142146
Cucumis sativus L. chr5 2 CH_csa_260 2 2 0.000250428
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_478 2 2 0.000673083
Eucalyptus grandis Chr04 2 CH_egr_680 2 2 0.0000585274
Fragaria vesca Fvb5 2 CH_fve_42 4 4 0.0000000000030669
Gossypium hirsutum A03 2 CH_ghi_157 4 9 0.000000000906451
Glycine max Gm09 2 CH_gma_103 4 6 0.00000000121773
Gossypium raimondii Chr03 2 CH_gra_454 2 4 0.000964906
Helianthus annuus HanXRQChr03 2 CH_han_171 4 7 0.0000000019988
Hydrangea macrophylla Hma1.2p1_0227F.1 2 CH_hma_322 2 3 0.000333241
Lotus japonicus chr2 2 CH_lja_367 2 2 0.000429046
Lonicera japonica GWHAAZE00000008 2 CH_lonja_268 3 8 0.00000301162
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_276 3 8 0.00000776377
Malus domestica Chr07 2 CH_mdo_234 3 6 0.000000431351
Manihot esculenta Chromosome06 2 CH_mes_415 2 2 0.000366379
Punica granatum NC_045127.1 2 CH_pgr_127 3 4 0.000000337802
Punica granatum NC_045130.1 2 CH_pgr_360 2 2 0.000750356
Prunus persica Pp05 2 CH_ppe_198 3 5 0.000000333845
Papaver somniferum NC_039365.1 2 CH_pso_424 3 17 0.0000620328
Papaver somniferum NC_039361.1 2 CH_pso_716 3 41 0.000970814
Populus trichocarpa Chr03 2 CH_ptr_496 2 2 0.000578001
Phaseolus vulgaris Chr04 2 CH_pvu_49 5 7 0.000000000000096386
Quercus lobata 9 2 CH_qlo_887 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_96 6 36 0.000000000000375052
Solanum lycopersicum SL4.0ch03 2 CH_sly_84 4 5 0.0000000000454957
Solanum pennellii Spenn-ch03 2 CH_spe_101 3 3 0.00000000296764
Solanum tuberosum ST4.03ch03 2 CH_stu_181 3 5 0.000000157555
Trifolium pratense Tp57577_TGAC_v2_LG1 2 CH_tpr_311 2 2 0.000227092
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_62 4 6 0.000000000180531
Vitis vinifera chr16 2 CH_vvi_136 3 3 0.0000000347148

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001