Functional clusters

Information

  • Type MapMan
  • Description Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.nucleoporin (NUP214)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_102833_HRSCAF_103052 1 CH_ama_83 2 2 0.000258665
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 1 CH_amhyb_121 2 2 0.0000841751
Camellia sinensis var. sinensis Chr7 1 CH_camsi_525 2 2 0.0000458547
Ceratophyllum demersum 1 1 CH_cde_84 2 2 0.0000789796
Corchorus olitorius AWUE01022487.1 1 CH_col_59 2 2 0.000292099
Carica papaya supercontig_119 1 CH_cpa_45 3 4 0.0000000542253
Hydrangea macrophylla Hma1.2p1_0589F.1 1 CH_hma_146 2 2 0.000111086
Lonicera japonica GWHAAZE00000002 1 CH_lonja_353 2 2 0.0000598874
Nicotiana tabacum Nitab4.5_0000075 1 CH_nta_134 2 2 0.000329182
Petunia axillaris Peaxi162Scf00186 1 CH_pax_184 2 2 0.0000703556
Populus trichocarpa Chr01 1 CH_ptr_361 2 2 0.0001734
Quercus lobata 1 1 CH_qlo_190 4 5 0.00000000000206439
Salvia bowleyana GWHASIU00000006 1 CH_sbo_447 2 6 0.000682408
Sequoiadendron giganteum chr2 1 CH_sgi_771 2 2 0.0000487151
Sapria himalayana scaffold84_1800311 1 CH_shi_73 2 2 0.0000571804
Solanum lycopersicum SL4.0ch02 1 CH_sly_146 3 5 0.0000000516734
Utricularia gibba unitig_0 1 CH_ugi_131 2 2 0.0000734592
Vigna mungo CM024071.1 1 CH_vmu_181 2 2 0.0000646141
Avicennia marina ScioBoG_102833_HRSCAF_103052 2 CH_ama_83 2 2 0.000258665
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 2 CH_amhyb_121 2 2 0.0000841751
Camellia sinensis var. sinensis Chr7 2 CH_camsi_525 2 2 0.0000458547
Ceratophyllum demersum 1 2 CH_cde_84 2 2 0.0000789796
Corchorus olitorius AWUE01022487.1 2 CH_col_59 2 2 0.000292099
Carica papaya supercontig_119 2 CH_cpa_45 3 4 0.0000000542253
Eucalyptus grandis Chr10 2 CH_egr_765 2 2 0.000175582
Hydrangea macrophylla Hma1.2p1_0589F.1 2 CH_hma_146 2 2 0.000111086
Lonicera japonica GWHAAZE00000002 2 CH_lonja_353 2 2 0.0000598874
Nicotiana tabacum Nitab4.5_0000075 2 CH_nta_134 2 2 0.000329182
Petunia axillaris Peaxi162Scf00186 2 CH_pax_184 2 2 0.0000703556
Populus trichocarpa Chr01 2 CH_ptr_361 2 2 0.0001734
Quercus lobata 1 2 CH_qlo_190 4 5 0.00000000000206439
Salvia bowleyana GWHASIU00000006 2 CH_sbo_447 2 6 0.000682408
Sequoiadendron giganteum chr2 2 CH_sgi_771 2 2 0.0000487151
Sapria himalayana scaffold84_1800311 2 CH_shi_73 2 2 0.0000571804
Solanum lycopersicum SL4.0ch02 2 CH_sly_146 3 5 0.0000000516734
Utricularia gibba unitig_0 2 CH_ugi_131 2 2 0.0000734592
Vigna mungo CM024071.1 2 CH_vmu_181 2 2 0.0000646141

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001