Functional clusters

Information

  • Type MapMan
  • Description Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.scaffold nucleoporin (NUP88)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC06 1 CH_bca_750 2 3 0.000192384
Davidia involucrata GWHABJS00000004 1 CH_din_75 3 3 0.00000000375197
Fragaria x ananassa Fvb7-1 1 CH_fan_510 2 2 0.000388576
Hydrangea macrophylla Hma1.2p1_0703F.1 1 CH_hma_145 2 3 0.000111086
Sequoiadendron giganteum chr9 1 CH_sgi_386 3 3 0.00000000355983
Solanum lycopersicum SL4.0ch11 1 CH_sly_456 2 2 0.000352164
Solanum lycopersicum SL4.0ch11 1 CH_sly_457 2 2 0.000352164
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_214 2 2 0.0000929238
Brassica carinata ChrC06 2 CH_bca_750 2 3 0.000192384
Davidia involucrata GWHABJS00000004 2 CH_din_75 3 3 0.00000000375197
Fragaria x ananassa Fvb7-1 2 CH_fan_510 2 2 0.000388576
Hydrangea macrophylla Hma1.2p1_0703F.1 2 CH_hma_145 2 3 0.000111086
Sequoiadendron giganteum chr9 2 CH_sgi_386 3 3 0.00000000355983
Solanum lycopersicum SL4.0ch11 2 CH_sly_456 2 2 0.000352164
Solanum lycopersicum SL4.0ch11 2 CH_sly_457 2 2 0.000352164
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_214 2 2 0.0000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001