Functional clusters
Information
- Type MapMan
- Description Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (IMPA)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_8 | 1 | CH_aly_163 | 3 | 3 | 0.00000143772 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 1 | CH_arhy_310 | 3 | 5 | 0.00000161307 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 1 | CH_arhy_311 | 3 | 5 | 0.00000161307 |
| Cicer arietinum L. | Ca_LG3_v3 | 1 | CH_car_42 | 5 | 37 | 0.0000000942245 |
| Coffea canephora | chr3 | 1 | CH_ccan_279 | 2 | 7 | 0.000255531 |
| Cardamine hirsuta | Chr6 | 1 | CH_chi_170 | 3 | 4 | 0.00000343927 |
| Capsella rubella | scaffold_8 | 1 | CH_cru_42 | 5 | 5 | 0.000000000000936431 |
| Gossypium hirsutum | A11 | 1 | CH_ghi_429 | 3 | 5 | 0.0000245864 |
| Manihot esculenta | Chromosome01 | 1 | CH_mes_198 | 3 | 3 | 0.000000922882 |
| Medicago truncatula | chr4 | 1 | CH_mtr_149 | 5 | 10 | 0.0000000000460952 |
| Medicago truncatula | chr7 | 1 | CH_mtr_470 | 3 | 5 | 0.0000206522 |
| Olea europaea | chr20 | 1 | CH_oeu_21 | 5 | 10 | 0.0000000000121433 |
| Punica granatum | NC_045131.1 | 1 | CH_pgr_361 | 2 | 2 | 0.000750356 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_58 | 8 | 8 | 6.1622e-25 |
| Vigna mungo | CM024070.1 | 1 | CH_vmu_316 | 3 | 21 | 0.00029085 |
| Arabidopsis lyrata | scaffold_8 | 2 | CH_aly_163 | 3 | 3 | 0.00000143772 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 2 | CH_arhy_310 | 3 | 5 | 0.00000161307 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 2 | CH_arhy_311 | 3 | 5 | 0.00000161307 |
| Cicer arietinum L. | Ca_LG3_v3 | 2 | CH_car_42 | 5 | 37 | 0.0000000942245 |
| Coffea canephora | chr3 | 2 | CH_ccan_279 | 2 | 7 | 0.000255531 |
| Cardamine hirsuta | Chr6 | 2 | CH_chi_170 | 3 | 4 | 0.00000343927 |
| Capsella rubella | scaffold_8 | 2 | CH_cru_42 | 5 | 5 | 0.000000000000936431 |
| Eucalyptus grandis | Chr02 | 2 | CH_egr_545 | 3 | 5 | 0.00000287667 |
| Gossypium hirsutum | A11 | 2 | CH_ghi_429 | 3 | 5 | 0.0000245864 |
| Manihot esculenta | Chromosome01 | 2 | CH_mes_198 | 3 | 3 | 0.000000922882 |
| Olea europaea | chr20 | 2 | CH_oeu_21 | 5 | 10 | 0.0000000000121433 |
| Punica granatum | NC_045131.1 | 2 | CH_pgr_361 | 2 | 2 | 0.000750356 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_58 | 8 | 8 | 6.1622e-25 |
| Vigna mungo | CM024070.1 | 2 | CH_vmu_316 | 3 | 21 | 0.00029085 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |