Functional clusters

Information

  • Type MapMan
  • Description Protein translocation.nucleus.nucleocytoplasmic transport.GTPase (Ran)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_8 1 CH_aly_269 3 24 0.000132041
Arabidopsis thaliana Chr5 1 CH_ath_389 2 3 0.000515668
Capsicum annuum PGAv.1.6.scaffold713 1 CH_can_350 2 2 0.000247831
Cicer arietinum L. Ca_LG5_v3 1 CH_car_45 3 4 0.000000145376
Cardamine hirsuta Chr6 1 CH_chi_307 2 2 0.000207361
Carya illinoinensis Chr07 1 CH_cil_538 2 2 0.000619828
Citrullus lanatus CG_Chr06 1 CH_cla_42 3 3 0.0000000472204
Cucumis melo chr02 1 CH_cme_81 3 3 0.0000000267031
Capsella rubella scaffold_6 1 CH_cru_379 2 2 0.000438693
Cucumis sativus L. chr1 1 CH_csa_161 3 12 0.0000091924
Daucus carota DCARv2_Chr1 1 CH_dca_242 2 2 0.0000637775
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_462 2 2 0.000448722
Eucalyptus grandis Chr03 1 CH_egr_130 6 8 9.08599e-17
Glycine max Gm04 1 CH_gma_156 3 3 0.0000000756348
Glycine max Gm06 1 CH_gma_157 3 3 0.0000000756348
Gossypium raimondii Chr10 1 CH_gra_317 2 2 0.000160832
Lupinus albus Lalb_Chr08 1 CH_lal_316 2 2 0.000314895
Manihot esculenta Chromosome16 1 CH_mes_428 2 2 0.000366379
Medicago truncatula chr3 1 CH_mtr_235 3 3 0.0000000101287
Punica granatum NC_045129.1 1 CH_pgr_220 2 2 0.0000750356
Physcomitrium patens Chr23 1 CH_ppa_340 2 2 0.000919089
Prunus persica Pp01 1 CH_ppe_420 2 2 0.000223789
Pisum sativum chr5LG3 1 CH_psa_408 2 2 0.000782452
Papaver somniferum NW_020634374.1 1 CH_pso_545 2 2 0.000225233
Populus trichocarpa Chr18 1 CH_ptr_447 2 2 0.000346801
Populus trichocarpa Chr06 1 CH_ptr_448 2 2 0.000346801
Phaseolus vulgaris Chr09 1 CH_pvu_121 3 3 0.0000000323906
Quercus lobata CM012294 1 CH_qlo_823 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_607 2 2 0.000119596
Striga asiatica scaffold4 1 CH_sas_117 2 2 0.000375223
Salix brachista GWHAAZH00000018 1 CH_sbr_298 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000006 1 CH_sci_44 3 3 0.0000000108744
Sechium edule LG08 1 CH_sed_343 2 2 0.000713419
Solanum lycopersicum SL4.0ch01 1 CH_sly_508 2 3 0.000528221
Solanum pennellii Spenn-ch01 1 CH_spe_467 2 3 0.000400297
Vigna mungo CM024072.1 1 CH_vmu_357 2 2 0.000387685
Vitis vinifera chr4 1 CH_vvi_391 2 2 0.000456378
Zea mays 6 1 CH_zma_284 2 2 0.000766969
Arabidopsis lyrata scaffold_8 2 CH_aly_269 3 24 0.000132041
Arabidopsis thaliana Chr5 2 CH_ath_389 2 3 0.000515668
Capsicum annuum PGAv.1.6.scaffold713 2 CH_can_350 2 2 0.000247831
Cicer arietinum L. Ca_LG5_v3 2 CH_car_45 3 4 0.000000145376
Cardamine hirsuta Chr6 2 CH_chi_307 2 2 0.000207361
Carya illinoinensis Chr07 2 CH_cil_538 2 2 0.000619828
Citrullus lanatus CG_Chr06 2 CH_cla_42 3 3 0.0000000472204
Cucumis melo chr02 2 CH_cme_81 3 3 0.0000000267031
Capsella rubella scaffold_6 2 CH_cru_379 2 2 0.000438693
Cucumis sativus L. chr1 2 CH_csa_161 3 12 0.0000091924
Daucus carota DCARv2_Chr1 2 CH_dca_242 2 2 0.0000637775
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_462 2 2 0.000448722
Eucalyptus grandis Chr03 2 CH_egr_130 6 8 9.08599e-17
Gossypium hirsutum A06 2 CH_ghi_714 2 2 0.000400523
Gossypium hirsutum D06 2 CH_ghi_715 2 2 0.000400523
Glycine max Gm04 2 CH_gma_156 3 3 0.0000000756348
Glycine max Gm06 2 CH_gma_157 3 3 0.0000000756348
Gossypium raimondii Chr10 2 CH_gra_317 2 2 0.000160832
Lupinus albus Lalb_Chr08 2 CH_lal_316 2 2 0.000314895
Manihot esculenta Chromosome16 2 CH_mes_428 2 2 0.000366379
Punica granatum NC_045129.1 2 CH_pgr_220 2 2 0.0000750356
Physcomitrium patens Chr23 2 CH_ppa_340 2 2 0.000919089
Prunus persica Pp01 2 CH_ppe_420 2 2 0.000223789
Pisum sativum chr5LG3 2 CH_psa_408 2 2 0.000782452
Papaver somniferum NW_020634374.1 2 CH_pso_545 2 2 0.000225233
Populus trichocarpa Chr18 2 CH_ptr_447 2 2 0.000346801
Populus trichocarpa Chr06 2 CH_ptr_448 2 2 0.000346801
Phaseolus vulgaris Chr09 2 CH_pvu_121 3 3 0.0000000323906
Quercus lobata CM012294 2 CH_qlo_823 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_607 2 2 0.000119596
Striga asiatica scaffold4 2 CH_sas_117 2 2 0.000375223
Salix brachista GWHAAZH00000018 2 CH_sbr_298 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000006 2 CH_sci_44 3 3 0.0000000108744
Sechium edule LG08 2 CH_sed_343 2 2 0.000713419
Solanum lycopersicum SL4.0ch01 2 CH_sly_508 2 3 0.000528221
Solanum pennellii Spenn-ch01 2 CH_spe_467 2 3 0.000400297
Vigna mungo CM024072.1 2 CH_vmu_357 2 2 0.000387685
Vitis vinifera chr4 2 CH_vvi_391 2 2 0.000456378
Zea mays 6 2 CH_zma_284 2 2 0.000766969

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001