Functional clusters

Information

  • Type MapMan
  • Description Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (ALADIN)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00101 1 CH_atr_166 2 2 0.0000794407
Lupinus albus Lalb_Chr22 1 CH_lal_186 2 2 0.0000524824
Lonicera japonica GWHAAZE00000001 1 CH_lonja_527 2 2 0.000359324
Lonicera japonica GWHAAZE00000002 1 CH_lonja_528 2 2 0.000359324
Malus domestica Chr14 1 CH_mdo_440 2 2 0.000113763
Quercus lobata 7 1 CH_qlo_645 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_468 2 2 0.0000398653
Striga asiatica scaffold106 1 CH_sas_84 2 6 0.000187606
Solanum lycopersicum SL4.0ch08 1 CH_sly_221 3 16 0.00000289277
Trochodendron aralioides group7 1 CH_tar_312 2 3 0.000180104
Vanilla planifolia CM028150.1 1 CH_vpl_233 2 3 0.000221656
Vitis vinifera chr8 1 CH_vvi_257 2 2 0.000076063
Amborella trichopoda AmTr_v1.0_scaffold00101 2 CH_atr_166 2 2 0.0000794407
Lupinus albus Lalb_Chr22 2 CH_lal_186 2 2 0.0000524824
Lonicera japonica GWHAAZE00000001 2 CH_lonja_527 2 2 0.000359324
Lonicera japonica GWHAAZE00000002 2 CH_lonja_528 2 2 0.000359324
Malus domestica Chr14 2 CH_mdo_440 2 2 0.000113763
Quercus lobata 7 2 CH_qlo_645 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_468 2 2 0.0000398653
Striga asiatica scaffold106 2 CH_sas_84 2 6 0.000187606
Solanum lycopersicum SL4.0ch08 2 CH_sly_221 3 16 0.00000289277
Trochodendron aralioides group7 2 CH_tar_312 2 3 0.000180104
Vanilla planifolia CM028150.1 2 CH_vpl_233 2 3 0.000221656
Vitis vinifera chr8 2 CH_vvi_257 2 2 0.000076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001