Functional clusters

Information

  • Type Gene Ontology
  • Description response to external stimulus

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 3 CH_acertr_467 19 80 0.000472175
Camellia sinensis var. sinensis Chr5 3 CH_camsi_466 7 7 0.0000276897
Marchantia polymorpha scaffold_8 3 CH_mpo_111 13 37 0.00033243
Populus trichocarpa scaffold_67 3 CH_ptr_259 9 10 0.00000406553
Acer truncatum chr5 4 CH_acertr_467 19 80 0.000472175
Camellia sinensis var. sinensis Chr5 4 CH_camsi_466 7 7 0.0000276897
Marchantia polymorpha scaffold_8 4 CH_mpo_111 13 37 0.00033243
Populus trichocarpa scaffold_67 4 CH_ptr_259 9 10 0.00000406553

Available child term results

Ontology identifier Description Number of clusters
GO:0002213 defense response to insect 14
GO:0002215 defense response to nematode 4
GO:0002220 innate immune response activating cell surface receptor signaling pathway 16
GO:0002229 defense response to oomycetes 16
GO:0002230 positive regulation of defense response to virus by host 40
GO:0002237 response to molecule of bacterial origin 2
GO:0002238 response to molecule of fungal origin 14
GO:0002239 response to oomycetes 16
GO:0002240 response to molecule of oomycetes origin 4
GO:0002752 cell surface pattern recognition receptor signaling pathway 4
GO:0002758 innate immune response-activating signal transduction 30
GO:0006995 cellular response to nitrogen starvation 18
GO:0009267 cellular response to starvation 4
GO:0009584 detection of visible light 10
GO:0009585 red, far-red light phototransduction 4
GO:0009590 detection of gravity 4
GO:0009594 detection of nutrient 2
GO:0009597 detection of virus 4
GO:0009609 response to symbiotic bacterium 14
GO:0009610 response to symbiotic fungus 2
GO:0009615 response to virus 2
GO:0009616 RNAi-mediated antiviral immune response 4
GO:0009617 response to bacterium 8
GO:0009620 response to fungus 4
GO:0009624 response to nematode 28
GO:0009625 response to insect 10
GO:0009626 plant-type hypersensitive response 18
GO:0009627 systemic acquired resistance 30
GO:0009638 phototropism 4
GO:0009649 entrainment of circadian clock 2
GO:0009682 induced systemic resistance 6
GO:0009861 jasmonic acid and ethylene-dependent systemic resistance 38
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 12
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009959 negative gravitropism 6
GO:0009970 cellular response to sulfate starvation 4
GO:0010106 cellular response to iron ion starvation 4
GO:0010112 regulation of systemic acquired resistance 38
GO:0010183 pollen tube guidance 40
GO:0010266 response to vitamin B1 40
GO:0010274 hydrotropism 10
GO:0010363 regulation of plant-type hypersensitive response 2
GO:0010438 cellular response to sulfur starvation 12
GO:0016036 cellular response to phosphate starvation 4
GO:0016045 detection of bacterium 18
GO:0016048 detection of temperature stimulus 6
GO:0031663 lipopolysaccharide-mediated signaling pathway 2
GO:0031669 cellular response to nutrient levels 2
GO:0032491 detection of molecule of fungal origin 32
GO:0032497 detection of lipopolysaccharide 2
GO:0033273 response to vitamin 4
GO:0033274 response to vitamin B2 30
GO:0033591 response to L-ascorbic acid 2
GO:0034050 programmed cell death induced by symbiont 4
GO:0034051 negative regulation of plant-type hypersensitive response 2
GO:0034052 positive regulation of plant-type hypersensitive response 2
GO:0034224 cellular response to zinc ion starvation 8
GO:0035874 cellular response to copper ion starvation 6
GO:0042149 cellular response to glucose starvation 2
GO:0042594 response to starvation 2
GO:0042631 cellular response to water deprivation 14
GO:0042742 defense response to bacterium 34
GO:0043153 entrainment of circadian clock by photoperiod 10
GO:0043562 cellular response to nitrogen levels 2
GO:0043617 cellular response to sucrose starvation 2
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045087 innate immune response 92
GO:0045088 regulation of innate immune response 4
GO:0050691 regulation of defense response to virus by host 2
GO:0050829 defense response to Gram-negative bacterium 32
GO:0050832 defense response to fungus 126
GO:0050982 detection of mechanical stimulus 42
GO:0051214 RNAi-mediated antiviral immunity against RNA virus 4
GO:0051365 cellular response to potassium ion starvation 6
GO:0051607 defense response to virus 106
GO:0051841 positive regulation by host of cytolysis of symbiont cells 32
GO:0061760 antifungal innate immune response 2
GO:0071217 cellular response to external biotic stimulus 10
GO:0071219 cellular response to molecule of bacterial origin 6
GO:0071226 cellular response to molecule of fungal origin 4
GO:0071260 cellular response to mechanical stimulus 2
GO:0072732 cellular response to calcium ion starvation 74
GO:0080027 response to herbivore 14
GO:0080040 positive regulation of cellular response to phosphate starvation 18
GO:0080169 cellular response to boron-containing substance deprivation 2
GO:0090549 response to carbon starvation 4
GO:0098542 defense response to other organism 14
GO:0140426 PAMP-triggered immunity signalling pathway 2
GO:1900150 regulation of defense response to fungus 12
GO:1900366 negative regulation of defense response to insect 2
GO:1900367 positive regulation of defense response to insect 6
GO:1900424 regulation of defense response to bacterium 12
GO:1900425 negative regulation of defense response to bacterium 36
GO:1900426 positive regulation of defense response to bacterium 8
GO:1901672 positive regulation of systemic acquired resistance 8
GO:1902288 regulation of defense response to oomycetes 40
GO:1902289 negative regulation of defense response to oomycetes 4
GO:1902290 positive regulation of defense response to oomycetes 22
GO:1905034 regulation of antifungal innate immune response 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001