Functional clusters

Information

  • Type Gene Ontology
  • Description response to bacterium

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Eucalyptus grandis Chr04 3 CH_egr_330 14 32 0.000000000724926
Lupinus albus Lalb_Chr18 3 CH_lal_414 10 47 0.000927058
Malus domestica Chr05 3 CH_mdo_630 6 11 0.000525079
Nelumbo nucifera chr7 3 CH_nnu_213 12 78 0.000128462
Eucalyptus grandis Chr04 4 CH_egr_330 14 32 0.000000000724926
Lupinus albus Lalb_Chr18 4 CH_lal_414 10 47 0.000927058
Malus domestica Chr05 4 CH_mdo_630 6 11 0.000525079
Nelumbo nucifera chr7 4 CH_nnu_213 12 78 0.000128462

Available child term results

Ontology identifier Description Number of clusters
GO:0002237 response to molecule of bacterial origin 2
GO:0009609 response to symbiotic bacterium 14
GO:0009682 induced systemic resistance 6
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0016045 detection of bacterium 18
GO:0031663 lipopolysaccharide-mediated signaling pathway 2
GO:0032497 detection of lipopolysaccharide 2
GO:0042742 defense response to bacterium 34
GO:0050829 defense response to Gram-negative bacterium 32
GO:0071219 cellular response to molecule of bacterial origin 6
GO:1900424 regulation of defense response to bacterium 12
GO:1900425 negative regulation of defense response to bacterium 36
GO:1900426 positive regulation of defense response to bacterium 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001