Functional clusters
Information
- Type Gene Ontology
- Description response to nematode
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_2 | 3 | CH_aly_235 | 3 | 4 | 0.000186484 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_15 | 14 | 41 | 2.53025e-25 |
| Brassica napus | A07 | 3 | CH_bna_155 | 4 | 4 | 0.0000000246151 |
| Brassica napus | A09 | 3 | CH_bna_186 | 4 | 5 | 0.000000123009 |
| Brassica rapa | A09 | 3 | CH_bra_11 | 9 | 20 | 2.4475e-17 |
| Capsella rubella | scaffold_1 | 3 | CH_cru_282 | 3 | 4 | 0.000248992 |
| Davidia involucrata | GWHABJS00000003 | 3 | CH_din_191 | 4 | 9 | 0.0000070161 |
| Eutrema salsugineum | scaffold_5 | 3 | CH_esa_147 | 4 | 13 | 0.0000692516 |
| Manihot esculenta | Chromosome02 | 3 | CH_mes_392 | 3 | 4 | 0.000554272 |
| Medicago truncatula | chr4 | 3 | CH_mtr_430 | 3 | 3 | 0.0000138156 |
| Rhododendron simsii | chr07 | 3 | CH_rsi_166 | 5 | 11 | 0.0000000225386 |
| Sequoiadendron giganteum | chr2 | 3 | CH_sgi_115 | 10 | 18 | 1.39144e-20 |
| Solanum pennellii | Spenn-ch05 | 3 | CH_spe_253 | 3 | 3 | 0.000021189 |
| Solanum tuberosum | ST4.03ch05 | 3 | CH_stu_345 | 3 | 3 | 0.0000257822 |
| Arabidopsis lyrata | scaffold_2 | 4 | CH_aly_235 | 3 | 4 | 0.000186484 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_15 | 14 | 41 | 2.53025e-25 |
| Brassica napus | A07 | 4 | CH_bna_155 | 4 | 4 | 0.0000000246151 |
| Brassica napus | A09 | 4 | CH_bna_186 | 4 | 5 | 0.000000123009 |
| Brassica rapa | A09 | 4 | CH_bra_11 | 9 | 20 | 2.4475e-17 |
| Capsella rubella | scaffold_1 | 4 | CH_cru_282 | 3 | 4 | 0.000248992 |
| Davidia involucrata | GWHABJS00000003 | 4 | CH_din_191 | 4 | 9 | 0.0000070161 |
| Eutrema salsugineum | scaffold_5 | 4 | CH_esa_147 | 4 | 13 | 0.0000692516 |
| Manihot esculenta | Chromosome02 | 4 | CH_mes_392 | 3 | 4 | 0.000554272 |
| Medicago truncatula | chr4 | 4 | CH_mtr_430 | 3 | 3 | 0.0000138156 |
| Rhododendron simsii | chr07 | 4 | CH_rsi_166 | 5 | 11 | 0.0000000225386 |
| Sequoiadendron giganteum | chr2 | 4 | CH_sgi_115 | 10 | 18 | 1.39144e-20 |
| Solanum pennellii | Spenn-ch05 | 4 | CH_spe_253 | 3 | 3 | 0.000021189 |
| Solanum tuberosum | ST4.03ch05 | 4 | CH_stu_345 | 3 | 3 | 0.0000257822 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |