Functional clusters

Information

  • Type Gene Ontology
  • Description transmembrane transporter activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_5 3 CH_aly_174 7 8 0.0000226791
Avicennia marina ScioBoG_102837_HRSCAF_103074 3 CH_ama_131 6 7 0.000983606
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 3 CH_arhy_516 8 12 0.000154306
Brassica napus C06 3 CH_bna_616 9 20 0.000543505
Brassica oleracea C9 3 CH_bol_403 11 38 0.000946167
Cicer arietinum L. Ca_LG7_v3 3 CH_car_72 8 11 0.0000167855
Cardamine hirsuta Chr6 3 CH_chi_262 12 36 0.000169876
Cucumis melo chr06 3 CH_cme_156 6 6 0.0000424309
Cucumis melo chr08 3 CH_cme_161 8 13 0.0000523429
Cucumis melo chr04 3 CH_cme_213 16 80 0.000206806
Corchorus olitorius AWUE01016487.1 3 CH_col_97 7 12 0.000446247
Chenopodium quinoa C_Quinoa_Scaffold_1675 3 CH_cqu_449 13 43 0.000311939
Durio zibethinus NW_019168470.1 3 CH_dzi_314 6 7 0.000554296
Erigeron canadensis Conyza_canadensis_scaffold:2 3 CH_eca_120 17 72 0.000000098162
Eucalyptus grandis Chr05 3 CH_egr_845 10 23 0.000538738
Erythranthe guttata scaffold_4 3 CH_egut_417 6 7 0.000785214
Glycine max Gm08 3 CH_gma_454 15 60 0.000491025
Lupinus albus Lalb_Chr13 3 CH_lal_155 11 18 0.00000171227
Lupinus albus Lalb_Chr17 3 CH_lal_156 9 11 0.0000017511
Lupinus albus Lalb_Chr13 3 CH_lal_32 15 16 0.0000000000000048562
Lupinus albus Lalb_Chr14 3 CH_lal_347 6 6 0.000359329
Lupinus albus Lalb_Chr22 3 CH_lal_386 7 9 0.000546764
Lotus japonicus chr4 3 CH_lja_66 12 16 0.00000000220899
Lonicera japonica GWHAAZE00000007 3 CH_lonja_325 7 7 0.00000663314
Lactuca sativa Lsat_1_v8_lg_8 3 CH_lsa_499 7 11 0.000831951
Magnolia biondii Chr01 3 CH_mbi_334 15 66 0.00000831677
Magnolia biondii Chr09 3 CH_mbi_380 12 42 0.0000308563
Magnolia biondii Chr14 3 CH_mbi_395 10 27 0.0000456732
Medicago truncatula chr4 3 CH_mtr_149 12 16 0.0000000000453953
Medicago truncatula chr7 3 CH_mtr_257 19 75 0.000000034896
Medicago truncatula chr3 3 CH_mtr_767 6 8 0.000991142
Oryza sativa ssp. japonica chr01 3 CH_osa_73 12 17 0.000000000100611
Petunia axillaris Peaxi162Scf00421 3 CH_pax_145 9 14 0.00000664271
Pisum sativum chr7LG7 3 CH_psa_205 12 36 0.0000364045
Papaver somniferum NC_039358.1 3 CH_pso_306 15 61 0.00000082045
Phaseolus vulgaris Chr03 3 CH_pvu_182 9 14 0.00000833489
Quercus lobata 3 3 CH_qlo_128 19 26 3.99536e-16
Quercus lobata CM012294 3 CH_qlo_170 14 15 0.0000000000000686467
Quercus lobata 4 3 CH_qlo_330 15 28 0.00000000456986
Quercus lobata 8 3 CH_qlo_462 9 10 0.000000262935
Quercus lobata 4 3 CH_qlo_504 16 43 0.000000790164
Quercus lobata 7 3 CH_qlo_782 7 8 0.000105978
Quercus lobata 6 3 CH_qlo_877 6 6 0.000309001
Quercus lobata CM012294 3 CH_qlo_936 7 9 0.000458296
Rhododendron simsii chr08 3 CH_rsi_315 9 15 0.0000213477
Sequoiadendron giganteum chr9 3 CH_sgi_305 25 80 0.00000000000471154
Sequoiadendron giganteum chr1 3 CH_sgi_44 26 29 1.17646e-29
Sequoiadendron giganteum chr3 3 CH_sgi_603 17 51 0.000000110171
Solanum pennellii Spenn-ch05 3 CH_spe_16 17 22 9.01035e-19
Solanum tuberosum ST4.03ch05 3 CH_stu_61 17 26 0.00000000000000390125
Trifolium pratense Tp57577_TGAC_v2_LG5 3 CH_tpr_257 7 9 0.000192834
Utricularia gibba unitig_748 3 CH_ugi_109 11 35 0.000286956
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_205 7 8 0.00008868
Vigna mungo CM024069.1 3 CH_vmu_112 11 21 0.00000171678
Vigna mungo CM024074.1 3 CH_vmu_129 8 10 0.00000544428
Vigna mungo CM024078.1 3 CH_vmu_154 12 33 0.0000439664
Arabidopsis lyrata scaffold_5 4 CH_aly_174 7 8 0.0000226791
Avicennia marina ScioBoG_102837_HRSCAF_103074 4 CH_ama_131 6 7 0.000983606
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 4 CH_arhy_516 8 12 0.000154306
Brassica napus C06 4 CH_bna_616 9 20 0.000543505
Brassica oleracea C9 4 CH_bol_403 11 38 0.000946167
Cicer arietinum L. Ca_LG7_v3 4 CH_car_72 8 11 0.0000167855
Cardamine hirsuta Chr6 4 CH_chi_262 12 36 0.000169876
Cucumis melo chr06 4 CH_cme_156 6 6 0.0000424309
Cucumis melo chr08 4 CH_cme_161 8 13 0.0000523429
Cucumis melo chr04 4 CH_cme_213 16 80 0.000206806
Corchorus olitorius AWUE01016487.1 4 CH_col_97 7 12 0.000446247
Chenopodium quinoa C_Quinoa_Scaffold_1675 4 CH_cqu_449 13 43 0.000311939
Durio zibethinus NW_019168470.1 4 CH_dzi_314 6 7 0.000554296
Erigeron canadensis Conyza_canadensis_scaffold:2 4 CH_eca_120 17 72 0.000000098162
Eucalyptus grandis Chr05 4 CH_egr_845 10 23 0.000538738
Erythranthe guttata scaffold_4 4 CH_egut_417 6 7 0.000785214
Glycine max Gm08 4 CH_gma_454 15 60 0.000491025
Lupinus albus Lalb_Chr13 4 CH_lal_155 11 18 0.00000171227
Lupinus albus Lalb_Chr17 4 CH_lal_156 9 11 0.0000017511
Lupinus albus Lalb_Chr13 4 CH_lal_32 15 16 0.0000000000000048562
Lupinus albus Lalb_Chr14 4 CH_lal_347 6 6 0.000359329
Lupinus albus Lalb_Chr22 4 CH_lal_386 7 9 0.000546764
Lotus japonicus chr4 4 CH_lja_66 12 16 0.00000000220899
Lonicera japonica GWHAAZE00000007 4 CH_lonja_325 7 7 0.00000663314
Lactuca sativa Lsat_1_v8_lg_8 4 CH_lsa_499 7 11 0.000831951
Magnolia biondii Chr01 4 CH_mbi_334 15 66 0.00000831677
Magnolia biondii Chr09 4 CH_mbi_380 12 42 0.0000308563
Magnolia biondii Chr14 4 CH_mbi_395 10 27 0.0000456732
Medicago truncatula chr4 4 CH_mtr_149 12 16 0.0000000000453953
Medicago truncatula chr7 4 CH_mtr_257 19 75 0.000000034896
Medicago truncatula chr3 4 CH_mtr_767 6 8 0.000991142
Oryza sativa ssp. japonica chr01 4 CH_osa_73 12 17 0.000000000100611
Petunia axillaris Peaxi162Scf00421 4 CH_pax_145 9 14 0.00000664271
Pisum sativum chr7LG7 4 CH_psa_205 12 36 0.0000364045
Papaver somniferum NC_039358.1 4 CH_pso_306 15 61 0.00000082045
Phaseolus vulgaris Chr03 4 CH_pvu_182 9 14 0.00000833489
Quercus lobata 3 4 CH_qlo_128 19 26 3.99536e-16
Quercus lobata CM012294 4 CH_qlo_170 14 15 0.0000000000000686467
Quercus lobata 4 4 CH_qlo_330 15 28 0.00000000456986
Quercus lobata 8 4 CH_qlo_462 9 10 0.000000262935
Quercus lobata 4 4 CH_qlo_504 16 43 0.000000790164
Quercus lobata 7 4 CH_qlo_782 7 8 0.000105978
Quercus lobata 6 4 CH_qlo_877 6 6 0.000309001
Quercus lobata CM012294 4 CH_qlo_936 7 9 0.000458296
Rhododendron simsii chr08 4 CH_rsi_315 9 15 0.0000213477
Sequoiadendron giganteum chr9 4 CH_sgi_305 25 80 0.00000000000471154
Sequoiadendron giganteum chr1 4 CH_sgi_44 26 29 1.17646e-29
Sequoiadendron giganteum chr3 4 CH_sgi_603 17 51 0.000000110171
Solanum pennellii Spenn-ch05 4 CH_spe_16 17 22 9.01035e-19
Solanum tuberosum ST4.03ch05 4 CH_stu_61 17 26 0.00000000000000390125
Trifolium pratense Tp57577_TGAC_v2_LG5 4 CH_tpr_257 7 9 0.000192834
Utricularia gibba unitig_748 4 CH_ugi_109 11 35 0.000286956
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_205 7 8 0.00008868
Vigna mungo CM024069.1 4 CH_vmu_112 11 21 0.00000171678
Vigna mungo CM024074.1 4 CH_vmu_129 8 10 0.00000544428
Vigna mungo CM024078.1 4 CH_vmu_154 12 33 0.0000439664

Available child term results

Ontology identifier Description Number of clusters
GO:0000064 L-ornithine transmembrane transporter activity 2
GO:0000095 S-adenosyl-L-methionine transmembrane transporter activity 2
GO:0000295 adenine nucleotide transmembrane transporter activity 4
GO:0004129 cytochrome-c oxidase activity 16
GO:0004970 ionotropic glutamate receptor activity 4
GO:0005216 ion channel activity 60
GO:0005222 intracellular cAMP-activated cation channel activity 4
GO:0005223 intracellular cGMP-activated cation channel activity 4
GO:0005227 calcium activated cation channel activity 42
GO:0005230 extracellular ligand-gated ion channel activity 2
GO:0005245 voltage-gated calcium channel activity 40
GO:0005247 voltage-gated chloride channel activity 16
GO:0005249 voltage-gated potassium channel activity 16
GO:0005254 chloride channel activity 8
GO:0005262 calcium channel activity 4
GO:0005267 potassium channel activity 20
GO:0005272 sodium channel activity 32
GO:0005310 dicarboxylic acid transmembrane transporter activity 4
GO:0005315 inorganic phosphate transmembrane transporter activity 10
GO:0005338 nucleotide-sugar transmembrane transporter activity 2
GO:0005351 carbohydrate:proton symporter activity 16
GO:0005354 galactose transmembrane transporter activity 2
GO:0005355 glucose transmembrane transporter activity 2
GO:0005358 high-affinity glucose:proton symporter activity 4
GO:0005363 maltose transmembrane transporter activity 6
GO:0005364 maltose:proton symporter activity 2
GO:0005366 myo-inositol:proton symporter activity 2
GO:0005384 manganese ion transmembrane transporter activity 2
GO:0005385 zinc ion transmembrane transporter activity 8
GO:0005388 P-type calcium transporter activity 68
GO:0005432 calcium:sodium antiporter activity 34
GO:0005451 monovalent cation:proton antiporter activity 22
GO:0005452 inorganic anion exchanger activity 20
GO:0005457 GDP-fucose transmembrane transporter activity 6
GO:0005458 GDP-mannose transmembrane transporter activity 2
GO:0005460 UDP-glucose transmembrane transporter activity 4
GO:0005464 UDP-xylose transmembrane transporter activity 20
GO:0008121 ubiquinol-cytochrome-c reductase activity 40
GO:0008137 NADH dehydrogenase (ubiquinone) activity 24
GO:0008271 secondary active sulfate transmembrane transporter activity 64
GO:0008273 calcium, potassium:sodium antiporter activity 2
GO:0008308 voltage-gated anion channel activity 14
GO:0008324 cation transmembrane transporter activity 10
GO:0008381 mechanosensitive ion channel activity 10
GO:0008493 tetracycline transmembrane transporter activity 2
GO:0008506 sucrose:proton symporter activity 2
GO:0008509 anion transmembrane transporter activity 4
GO:0008511 sodium:potassium:chloride symporter activity 4
GO:0008514 organic anion transmembrane transporter activity 12
GO:0008515 sucrose transmembrane transporter activity 16
GO:0008519 ammonium transmembrane transporter activity 2
GO:0008521 acetyl-CoA transmembrane transporter activity 2
GO:0008551 P-type cadmium transporter activity 2
GO:0008553 P-type proton-exporting transporter activity 10
GO:0008559 ABC-type xenobiotic transporter activity 20
GO:0009671 nitrate:proton symporter activity 4
GO:0009673 low-affinity phosphate transmembrane transporter activity 4
GO:0009674 potassium:sodium symporter activity 14
GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity 20
GO:0010174 nucleoside transmembrane transporter activity, against a concentration gradient 12
GO:0010292 GTP:GDP antiporter activity 2
GO:0010329 auxin efflux transmembrane transporter activity 2
GO:0010348 lithium:proton antiporter activity 8
GO:0010486 manganese:proton antiporter activity 10
GO:0010542 nitrate efflux transmembrane transporter activity 8
GO:0015075 ion transmembrane transporter activity 8
GO:0015078 proton transmembrane transporter activity 4
GO:0015079 potassium ion transmembrane transporter activity 114
GO:0015081 sodium ion transmembrane transporter activity 8
GO:0015083 aluminum ion transmembrane transporter activity 14
GO:0015086 cadmium ion transmembrane transporter activity 2
GO:0015087 cobalt ion transmembrane transporter activity 8
GO:0015089 high-affinity copper ion transmembrane transporter activity 6
GO:0015095 magnesium ion transmembrane transporter activity 2
GO:0015098 molybdate ion transmembrane transporter activity 2
GO:0015105 arsenite transmembrane transporter activity 2
GO:0015108 chloride transmembrane transporter activity 6
GO:0015112 nitrate transmembrane transporter activity 44
GO:0015113 nitrite transmembrane transporter activity 2
GO:0015115 silicate transmembrane transporter activity 12
GO:0015121 phosphoenolpyruvate:phosphate antiporter activity 2
GO:0015129 lactate transmembrane transporter activity 8
GO:0015137 citrate transmembrane transporter activity 30
GO:0015139 alpha-ketoglutarate transmembrane transporter activity 4
GO:0015140 malate transmembrane transporter activity 2
GO:0015145 monosaccharide transmembrane transporter activity 132
GO:0015148 D-xylose transmembrane transporter activity 24
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity 8
GO:0015168 glycerol transmembrane transporter activity 2
GO:0015171 amino acid transmembrane transporter activity 4
GO:0015172 acidic amino acid transmembrane transporter activity 8
GO:0015173 aromatic amino acid transmembrane transporter activity 10
GO:0015174 basic amino acid transmembrane transporter activity 2
GO:0015183 L-aspartate transmembrane transporter activity 10
GO:0015185 gamma-aminobutyric acid transmembrane transporter activity 46
GO:0015186 L-glutamine transmembrane transporter activity 10
GO:0015194 L-serine transmembrane transporter activity 4
GO:0015200 methylammonium transmembrane transporter activity 2
GO:0015203 polyamine transmembrane transporter activity 36
GO:0015205 nucleobase transmembrane transporter activity 4
GO:0015211 purine nucleoside transmembrane transporter activity 194
GO:0015216 purine nucleotide transmembrane transporter activity 2
GO:0015220 choline transmembrane transporter activity 6
GO:0015225 biotin transmembrane transporter activity 12
GO:0015226 carnitine transmembrane transporter activity 42
GO:0015233 pantothenate transmembrane transporter activity 10
GO:0015250 water channel activity 2
GO:0015267 channel activity 76
GO:0015269 calcium-activated potassium channel activity 30
GO:0015271 outward rectifier potassium channel activity 4
GO:0015276 ligand-gated ion channel activity 324
GO:0015284 fructose uniporter activity 6
GO:0015288 porin activity 2
GO:0015291 secondary active transmembrane transporter activity 2
GO:0015292 uniporter activity 8
GO:0015293 symporter activity 8
GO:0015299 solute:proton antiporter activity 170
GO:0015301 anion:anion antiporter activity 2
GO:0015318 inorganic molecular entity transmembrane transporter activity 2
GO:0015334 high-affinity oligopeptide transmembrane transporter activity 2
GO:0015368 calcium:cation antiporter activity 10
GO:0015369 calcium:proton antiporter activity 18
GO:0015377 cation:chloride symporter activity 22
GO:0015385 sodium:proton antiporter activity 4
GO:0015386 potassium:proton antiporter activity 10
GO:0015398 high-affinity secondary active ammonium transmembrane transporter activity 6
GO:0015415 ATPase-coupled phosphate ion transmembrane transporter activity 14
GO:0015431 ABC-type glutathione S-conjugate transporter activity 18
GO:0015444 P-type magnesium transporter activity 4
GO:0015462 ABC-type protein transporter activity 4
GO:0015505 uracil:cation symporter activity 22
GO:0015562 efflux transmembrane transporter activity 2
GO:0015932 nucleobase-containing compound transmembrane transporter activity 4
GO:0017077 oxidative phosphorylation uncoupler activity 6
GO:0019829 ATPase-coupled cation transmembrane transporter activity 22
GO:0022803 passive transmembrane transporter activity 2
GO:0022821 potassium ion antiporter activity 20
GO:0022843 voltage-gated cation channel activity 2
GO:0022853 active ion transmembrane transporter activity 10
GO:0022883 zinc efflux transmembrane transporter activity 8
GO:0022890 inorganic cation transmembrane transporter activity 2
GO:0030171 voltage-gated proton channel activity 2
GO:0034639 L-amino acid efflux transmembrane transporter activity 4
GO:0035673 oligopeptide transmembrane transporter activity 176
GO:0042626 ATPase-coupled transmembrane transporter activity 30
GO:0042900 arabinose transmembrane transporter activity 4
GO:0042907 xanthine transmembrane transporter activity 2
GO:0042910 xenobiotic transmembrane transporter activity 282
GO:0042937 tripeptide transmembrane transporter activity 76
GO:0043879 glycolate transmembrane transporter activity 8
GO:0044604 ABC-type phytochelatin transporter activity 14
GO:0046873 metal ion transmembrane transporter activity 12
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 2
GO:0046943 carboxylic acid transmembrane transporter activity 6
GO:0046961 proton-transporting ATPase activity, rotational mechanism 6
GO:0050833 pyruvate transmembrane transporter activity 2
GO:0051119 sugar transmembrane transporter activity 76
GO:0051724 NAD transmembrane transporter activity 4
GO:0051980 iron-nicotianamine transmembrane transporter activity 14
GO:0055055 D-glucose:proton symporter activity 22
GO:0071916 dipeptide transmembrane transporter activity 2
GO:0080054 low-affinity nitrate transmembrane transporter activity 40
GO:0080122 AMP transmembrane transporter activity 2
GO:0080139 borate efflux transmembrane transporter activity 10
GO:0090417 N-methylnicotinate transmembrane transporter activity 4
GO:0090440 abscisic acid transmembrane transporter activity 4
GO:0090448 glucosinolate:proton symporter activity 6
GO:0090482 vitamin transmembrane transporter activity 2
GO:0099604 ligand-gated calcium channel activity 10
GO:0140359 ABC-type transporter activity 436
GO:1901505 carbohydrate derivative transmembrane transporter activity 2
GO:1901683 arsenate ion transmembrane transporter activity 18
GO:1901974 glycerate transmembrane transporter activity 6
GO:1902417 (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity 2
GO:1903425 fluoride transmembrane transporter activity 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001