Functional clusters
Information
- Type Gene Ontology
- Description sodium channel activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Coffea canephora | chr11 | 3 | CH_ccan_321 | 2 | 17 | 0.000332187 |
| Citrus clementina | scaffold_2 | 3 | CH_ccl_129 | 3 | 3 | 0.0000000100941 |
| Carya illinoinensis | Chr08 | 3 | CH_cil_180 | 3 | 5 | 0.0000000576263 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1686 | 3 | CH_cqu_380 | 2 | 2 | 0.000142146 |
| Eucalyptus grandis | Chr03 | 3 | CH_egr_113 | 6 | 6 | 4.32778e-19 |
| Lotus japonicus | chr1 | 3 | CH_lja_76 | 4 | 22 | 0.00000000801977 |
| Malus domestica | Chr02 | 3 | CH_mdo_461 | 2 | 3 | 0.000113761 |
| Olea europaea | chr22 | 3 | CH_oeu_167 | 2 | 2 | 0.0000533789 |
| Papaver somniferum | NC_039363.1 | 3 | CH_pso_509 | 2 | 2 | 0.000135176 |
| Populus trichocarpa | Chr06 | 3 | CH_ptr_87 | 5 | 7 | 0.00000000000226182 |
| Simmondsia chinensis | GWHAASQ00000006 | 3 | CH_sci_150 | 2 | 2 | 0.0000851426 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_49 | 12 | 39 | 9.81163e-28 |
| Theobroma cacao | Chromosome_1 | 3 | CH_tca_271 | 2 | 2 | 0.0000732386 |
| Tarenaya hassleriana | NW_010966665.1 | 3 | CH_tha_154 | 2 | 2 | 0.000419082 |
| Tripterygium wilfordii | NC_052240.1 | 3 | CH_twi_110 | 3 | 5 | 0.000000186725 |
| Vitis vinifera | chr11 | 3 | CH_vvi_262 | 2 | 2 | 0.000076063 |
| Coffea canephora | chr11 | 4 | CH_ccan_321 | 2 | 17 | 0.000332187 |
| Citrus clementina | scaffold_2 | 4 | CH_ccl_129 | 3 | 3 | 0.0000000100941 |
| Carya illinoinensis | Chr08 | 4 | CH_cil_180 | 3 | 5 | 0.0000000576263 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1686 | 4 | CH_cqu_380 | 2 | 2 | 0.000142146 |
| Eucalyptus grandis | Chr03 | 4 | CH_egr_113 | 6 | 6 | 4.32778e-19 |
| Lotus japonicus | chr1 | 4 | CH_lja_76 | 4 | 22 | 0.00000000801977 |
| Malus domestica | Chr02 | 4 | CH_mdo_461 | 2 | 3 | 0.000113761 |
| Olea europaea | chr22 | 4 | CH_oeu_167 | 2 | 2 | 0.0000533789 |
| Papaver somniferum | NC_039363.1 | 4 | CH_pso_509 | 2 | 2 | 0.000135176 |
| Populus trichocarpa | Chr06 | 4 | CH_ptr_87 | 5 | 7 | 0.00000000000226182 |
| Simmondsia chinensis | GWHAASQ00000006 | 4 | CH_sci_150 | 2 | 2 | 0.0000851426 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_49 | 12 | 39 | 9.81163e-28 |
| Theobroma cacao | Chromosome_1 | 4 | CH_tca_271 | 2 | 2 | 0.0000732386 |
| Tarenaya hassleriana | NW_010966665.1 | 4 | CH_tha_154 | 2 | 2 | 0.000419082 |
| Tripterygium wilfordii | NC_052240.1 | 4 | CH_twi_110 | 3 | 5 | 0.000000186725 |
| Vitis vinifera | chr11 | 4 | CH_vvi_262 | 2 | 2 | 0.000076063 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |