Functional clusters
Information
- Type Gene Ontology
- Description low-affinity nitrate transmembrane transporter activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica oleracea | C2 | 3 | CH_bol_378 | 2 | 2 | 0.000686409 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 3 | CH_bvu_237 | 2 | 2 | 0.00049675 |
| Coffea canephora | chr10 | 3 | CH_ccan_378 | 2 | 15 | 0.00063882 |
| Citrus clementina | scaffold_5 | 3 | CH_ccl_390 | 2 | 2 | 0.000492187 |
| Carica papaya | supercontig_177 | 3 | CH_cpa_54 | 3 | 3 | 0.0000000542279 |
| Daucus carota | DCARv2_Chr5 | 3 | CH_dca_341 | 2 | 2 | 0.000382665 |
| Helianthus annuus | HanXRQChr17 | 3 | CH_han_225 | 4 | 20 | 0.0000000293265 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 3 | CH_lsa_483 | 2 | 2 | 0.00077101 |
| Magnolia biondii | Chr17 | 3 | CH_mbi_159 | 3 | 3 | 0.0000000141523 |
| Malus domestica | Chr15 | 3 | CH_mdo_678 | 2 | 3 | 0.000682551 |
| Medicago truncatula | chr2 | 3 | CH_mtr_171 | 4 | 5 | 0.000000000218463 |
| Prunus persica | Pp07 | 3 | CH_ppe_427 | 2 | 2 | 0.000447577 |
| Phaseolus vulgaris | Chr11 | 3 | CH_pvu_362 | 2 | 2 | 0.000734727 |
| Quercus lobata | 4 | 3 | CH_qlo_189 | 6 | 15 | 0.000000000000510141 |
| Quercus lobata | CM012294 | 3 | CH_qlo_395 | 4 | 7 | 0.0000000343633 |
| Sechium edule | LG06 | 3 | CH_sed_240 | 2 | 2 | 0.000428052 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_171 | 6 | 8 | 2.96575e-16 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_314 | 5 | 9 | 0.0000000000068455 |
| Trochodendron aralioides | group11 | 3 | CH_tar_445 | 2 | 2 | 0.000600366 |
| Tripterygium wilfordii | NC_052239.1 | 3 | CH_twi_177 | 3 | 6 | 0.0000205284 |
| Brassica oleracea | C2 | 4 | CH_bol_378 | 2 | 2 | 0.000686409 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 4 | CH_bvu_237 | 2 | 2 | 0.00049675 |
| Coffea canephora | chr10 | 4 | CH_ccan_378 | 2 | 15 | 0.00063882 |
| Citrus clementina | scaffold_5 | 4 | CH_ccl_390 | 2 | 2 | 0.000492187 |
| Carica papaya | supercontig_177 | 4 | CH_cpa_54 | 3 | 3 | 0.0000000542279 |
| Daucus carota | DCARv2_Chr5 | 4 | CH_dca_341 | 2 | 2 | 0.000382665 |
| Helianthus annuus | HanXRQChr17 | 4 | CH_han_225 | 4 | 20 | 0.0000000293265 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 4 | CH_lsa_483 | 2 | 2 | 0.00077101 |
| Magnolia biondii | Chr17 | 4 | CH_mbi_159 | 3 | 3 | 0.0000000141523 |
| Malus domestica | Chr15 | 4 | CH_mdo_678 | 2 | 3 | 0.000682551 |
| Medicago truncatula | chr2 | 4 | CH_mtr_171 | 4 | 5 | 0.000000000218463 |
| Prunus persica | Pp07 | 4 | CH_ppe_427 | 2 | 2 | 0.000447577 |
| Phaseolus vulgaris | Chr11 | 4 | CH_pvu_362 | 2 | 2 | 0.000734727 |
| Quercus lobata | 4 | 4 | CH_qlo_189 | 6 | 15 | 0.000000000000510141 |
| Quercus lobata | CM012294 | 4 | CH_qlo_395 | 4 | 7 | 0.0000000343633 |
| Sechium edule | LG06 | 4 | CH_sed_240 | 2 | 2 | 0.000428052 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_171 | 6 | 8 | 2.96575e-16 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_314 | 5 | 9 | 0.0000000000068455 |
| Trochodendron aralioides | group11 | 4 | CH_tar_445 | 2 | 2 | 0.000600366 |
| Tripterygium wilfordii | NC_052239.1 | 4 | CH_twi_177 | 3 | 6 | 0.0000205284 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |