Functional clusters

Information

  • Type Gene Ontology
  • Description gamma-aminobutyric acid transmembrane transporter activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr11 3 CH_acertr_259 3 14 0.0000271099
Acer truncatum chr12 3 CH_acertr_498 2 2 0.00070497
Aquilegia oxysepala CHR04 3 CH_aox_264 2 2 0.000481193
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 3 CH_arhy_270 3 3 0.000000112936
Beta vulgaris Chr6_EL10_PGA_scaffold0 3 CH_bvu_209 2 2 0.000248375
Capsicum annuum PGAv.1.6.scaffold610 3 CH_can_373 2 2 0.000247831
Cicer arietinum L. Ca_LG4_v3 3 CH_car_185 2 2 0.000466981
Carpinus fangiana Cfa07 3 CH_cfa_306 2 2 0.000454408
Chenopodium quinoa C_Quinoa_Scaffold_2169 3 CH_cqu_171 3 3 0.000000282885
Daucus carota DCARv2_Chr2 3 CH_dca_295 2 2 0.000191333
Eucalyptus grandis Chr02 3 CH_egr_812 2 2 0.000351165
Glycine max Gm20 3 CH_gma_374 2 2 0.000227734
Marchantia polymorpha scaffold_32 3 CH_mpo_103 2 2 0.000331327
Medicago truncatula chr1 3 CH_mtr_563 2 2 0.000123259
Oryza sativa ssp. japonica chr01 3 CH_osa_80 4 7 0.000000000231969
Punica granatum NC_045129.1 3 CH_pgr_366 2 3 0.000675279
Prunus persica Pp02 3 CH_ppe_453 2 3 0.000671324
Pisum sativum chr6LG2 3 CH_psa_272 2 2 0.00015649
Papaver somniferum NC_039361.1 3 CH_pso_680 2 2 0.000811057
Phaseolus vulgaris Chr07 3 CH_pvu_286 2 2 0.000220418
Sequoiadendron giganteum chr8 3 CH_sgi_208 6 27 0.000000000000012782
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_286 2 2 0.000278772
Vigna mungo CM024071.1 3 CH_vmu_83 3 4 0.000000100197
Acer truncatum chr11 4 CH_acertr_259 3 14 0.0000271099
Acer truncatum chr12 4 CH_acertr_498 2 2 0.00070497
Aquilegia oxysepala CHR04 4 CH_aox_264 2 2 0.000481193
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 4 CH_arhy_270 3 3 0.000000112936
Beta vulgaris Chr6_EL10_PGA_scaffold0 4 CH_bvu_209 2 2 0.000248375
Capsicum annuum PGAv.1.6.scaffold610 4 CH_can_373 2 2 0.000247831
Cicer arietinum L. Ca_LG4_v3 4 CH_car_185 2 2 0.000466981
Carpinus fangiana Cfa07 4 CH_cfa_306 2 2 0.000454408
Chenopodium quinoa C_Quinoa_Scaffold_2169 4 CH_cqu_171 3 3 0.000000282885
Daucus carota DCARv2_Chr2 4 CH_dca_295 2 2 0.000191333
Eucalyptus grandis Chr02 4 CH_egr_812 2 2 0.000351165
Glycine max Gm20 4 CH_gma_374 2 2 0.000227734
Marchantia polymorpha scaffold_32 4 CH_mpo_103 2 2 0.000331327
Medicago truncatula chr1 4 CH_mtr_563 2 2 0.000123259
Oryza sativa ssp. japonica chr01 4 CH_osa_80 4 7 0.000000000231969
Punica granatum NC_045129.1 4 CH_pgr_366 2 3 0.000675279
Prunus persica Pp02 4 CH_ppe_453 2 3 0.000671324
Pisum sativum chr6LG2 4 CH_psa_272 2 2 0.00015649
Papaver somniferum NC_039361.1 4 CH_pso_680 2 2 0.000811057
Phaseolus vulgaris Chr07 4 CH_pvu_286 2 2 0.000220418
Sequoiadendron giganteum chr8 4 CH_sgi_208 6 27 0.000000000000012782
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_286 2 2 0.000278772
Vigna mungo CM024071.1 4 CH_vmu_83 3 4 0.000000100197

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001