Functional clusters
Information
- Type Gene Ontology
- Description sugar transmembrane transporter activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-11 | 3 | CH_aar_108 | 4 | 7 | 0.00000325233 |
| Aethionema arabicum | LG-5 | 3 | CH_aar_144 | 3 | 3 | 0.0000681216 |
| Arabidopsis lyrata | scaffold_1 | 3 | CH_aly_103 | 4 | 5 | 0.000000318122 |
| Arabidopsis lyrata | scaffold_3 | 3 | CH_aly_303 | 3 | 5 | 0.000550309 |
| Arabidopsis thaliana | Chr3 | 3 | CH_ath_188 | 4 | 6 | 0.000000480994 |
| Brassica carinata | ChrC07 | 3 | CH_bca_639 | 3 | 3 | 0.000128492 |
| Brassica carinata | ChrB07 | 3 | CH_bca_640 | 3 | 3 | 0.000128492 |
| Brassica carinata | ChrC05 | 3 | CH_bca_853 | 3 | 4 | 0.000513541 |
| Brassica rapa | A06 | 3 | CH_bra_267 | 3 | 4 | 0.000482558 |
| Coffea canephora | chr2 | 3 | CH_ccan_22 | 6 | 74 | 0.0000000000050907 |
| Cardamine hirsuta | Chr3 | 3 | CH_chi_303 | 3 | 4 | 0.000222537 |
| Carya illinoinensis | Chr04 | 3 | CH_cil_432 | 3 | 4 | 0.00022755 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 3 | CH_cqu_508 | 3 | 5 | 0.000619418 |
| Capsella rubella | scaffold_3 | 3 | CH_cru_234 | 3 | 3 | 0.0000920592 |
| Davidia involucrata | GWHABJS00000005 | 3 | CH_din_85 | 5 | 11 | 0.00000000814077 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 3 | CH_eca_212 | 3 | 3 | 0.0000122626 |
| Eucalyptus grandis | Chr02 | 3 | CH_egr_26 | 13 | 14 | 8.72775e-31 |
| Eucalyptus grandis | Chr08 | 3 | CH_egr_489 | 4 | 4 | 0.00000046104 |
| Eucalyptus grandis | Chr04 | 3 | CH_egr_890 | 3 | 4 | 0.000983198 |
| Eucalyptus grandis | Chr09 | 3 | CH_egr_891 | 3 | 4 | 0.000983198 |
| Eutrema salsugineum | scaffold_5 | 3 | CH_esa_223 | 3 | 4 | 0.00034339 |
| Gossypium hirsutum | A11 | 3 | CH_ghi_193 | 5 | 10 | 0.0000000165176 |
| Gossypium hirsutum | D11 | 3 | CH_ghi_99 | 6 | 8 | 0.00000000000171932 |
| Gossypium raimondii | Chr07 | 3 | CH_gra_100 | 5 | 10 | 0.0000000102332 |
| Manihot esculenta | Chromosome09 | 3 | CH_mes_115 | 5 | 5 | 0.00000000015998 |
| Manihot esculenta | Chromosome08 | 3 | CH_mes_165 | 4 | 4 | 0.000000121845 |
| Nelumbo nucifera | chr3 | 3 | CH_nnu_152 | 4 | 14 | 0.00000793155 |
| Punica granatum | NC_045134.1 | 3 | CH_pgr_238 | 4 | 11 | 0.0000420219 |
| Punica granatum | NC_045133.1 | 3 | CH_pgr_94 | 5 | 6 | 0.00000000106804 |
| Quercus lobata | 9 | 3 | CH_qlo_164 | 8 | 20 | 0.0000000000000244208 |
| Quercus lobata | 6 | 3 | CH_qlo_913 | 3 | 4 | 0.00033275 |
| Quercus lobata | 3 | 3 | CH_qlo_98 | 11 | 47 | 4.20621e-18 |
| Solanum lycopersicum | SL4.0ch04 | 3 | CH_sly_173 | 4 | 4 | 0.000000191855 |
| Schrenkiella parvula | ch3-1 | 3 | CH_spa_112 | 3 | 3 | 0.0000722526 |
| Theobroma cacao | Chromosome_5 | 3 | CH_tca_111 | 5 | 8 | 0.00000000335389 |
| Tarenaya hassleriana | NW_010961290.1 | 3 | CH_tha_24 | 5 | 5 | 0.000000000378291 |
| Zea mays | 8 | 3 | CH_zma_244 | 3 | 3 | 0.0001713 |
| Zea mays | 6 | 3 | CH_zma_320 | 3 | 4 | 0.000684369 |
| Aethionema arabicum | LG-11 | 4 | CH_aar_108 | 4 | 7 | 0.00000325233 |
| Aethionema arabicum | LG-5 | 4 | CH_aar_144 | 3 | 3 | 0.0000681216 |
| Arabidopsis lyrata | scaffold_1 | 4 | CH_aly_103 | 4 | 5 | 0.000000318122 |
| Arabidopsis lyrata | scaffold_3 | 4 | CH_aly_303 | 3 | 5 | 0.000550309 |
| Arabidopsis thaliana | Chr3 | 4 | CH_ath_188 | 4 | 6 | 0.000000480994 |
| Brassica carinata | ChrC07 | 4 | CH_bca_639 | 3 | 3 | 0.000128492 |
| Brassica carinata | ChrB07 | 4 | CH_bca_640 | 3 | 3 | 0.000128492 |
| Brassica carinata | ChrC05 | 4 | CH_bca_853 | 3 | 4 | 0.000513541 |
| Brassica rapa | A06 | 4 | CH_bra_267 | 3 | 4 | 0.000482558 |
| Coffea canephora | chr2 | 4 | CH_ccan_22 | 6 | 74 | 0.0000000000050907 |
| Cardamine hirsuta | Chr3 | 4 | CH_chi_303 | 3 | 4 | 0.000222537 |
| Carya illinoinensis | Chr04 | 4 | CH_cil_432 | 3 | 4 | 0.00022755 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 4 | CH_cqu_508 | 3 | 5 | 0.000619418 |
| Capsella rubella | scaffold_3 | 4 | CH_cru_234 | 3 | 3 | 0.0000920592 |
| Davidia involucrata | GWHABJS00000005 | 4 | CH_din_85 | 5 | 11 | 0.00000000814077 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 4 | CH_eca_212 | 3 | 3 | 0.0000122626 |
| Eucalyptus grandis | Chr02 | 4 | CH_egr_26 | 13 | 14 | 8.72775e-31 |
| Eucalyptus grandis | Chr08 | 4 | CH_egr_489 | 4 | 4 | 0.00000046104 |
| Eucalyptus grandis | Chr04 | 4 | CH_egr_890 | 3 | 4 | 0.000983198 |
| Eucalyptus grandis | Chr09 | 4 | CH_egr_891 | 3 | 4 | 0.000983198 |
| Eutrema salsugineum | scaffold_5 | 4 | CH_esa_223 | 3 | 4 | 0.00034339 |
| Gossypium hirsutum | A11 | 4 | CH_ghi_193 | 5 | 10 | 0.0000000165176 |
| Gossypium hirsutum | D11 | 4 | CH_ghi_99 | 6 | 8 | 0.00000000000171932 |
| Gossypium raimondii | Chr07 | 4 | CH_gra_100 | 5 | 10 | 0.0000000102332 |
| Manihot esculenta | Chromosome09 | 4 | CH_mes_115 | 5 | 5 | 0.00000000015998 |
| Manihot esculenta | Chromosome08 | 4 | CH_mes_165 | 4 | 4 | 0.000000121845 |
| Nelumbo nucifera | chr3 | 4 | CH_nnu_152 | 4 | 14 | 0.00000793155 |
| Punica granatum | NC_045134.1 | 4 | CH_pgr_238 | 4 | 11 | 0.0000420219 |
| Punica granatum | NC_045133.1 | 4 | CH_pgr_94 | 5 | 6 | 0.00000000106804 |
| Quercus lobata | 9 | 4 | CH_qlo_164 | 8 | 20 | 0.0000000000000244208 |
| Quercus lobata | 6 | 4 | CH_qlo_913 | 3 | 4 | 0.00033275 |
| Quercus lobata | 3 | 4 | CH_qlo_98 | 11 | 47 | 4.20621e-18 |
| Solanum lycopersicum | SL4.0ch04 | 4 | CH_sly_173 | 4 | 4 | 0.000000191855 |
| Schrenkiella parvula | ch3-1 | 4 | CH_spa_112 | 3 | 3 | 0.0000722526 |
| Theobroma cacao | Chromosome_5 | 4 | CH_tca_111 | 5 | 8 | 0.00000000335389 |
| Tarenaya hassleriana | NW_010961290.1 | 4 | CH_tha_24 | 5 | 5 | 0.000000000378291 |
| Zea mays | 8 | 4 | CH_zma_244 | 3 | 3 | 0.0001713 |
| Zea mays | 6 | 4 | CH_zma_320 | 3 | 4 | 0.000684369 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0005354 | galactose transmembrane transporter activity | 2 |
| GO:0005355 | glucose transmembrane transporter activity | 2 |
| GO:0005358 | high-affinity glucose:proton symporter activity | 4 |
| GO:0015145 | monosaccharide transmembrane transporter activity | 132 |
| GO:0015148 | D-xylose transmembrane transporter activity | 24 |
| GO:0015284 | fructose uniporter activity | 6 |
| GO:0042900 | arabinose transmembrane transporter activity | 4 |
| GO:0055055 | D-glucose:proton symporter activity | 22 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |