Functional clusters

Information

  • Type Gene Ontology
  • Description metal ion transmembrane transporter activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica napus C07 3 CH_bna_215 6 12 0.000000396803
Brassica oleracea C7 3 CH_bol_139 6 13 0.000000325194
Lupinus albus Lalb_Chr02 3 CH_lal_100 8 24 0.0000000415862
Lupinus albus Lalb_Chr02 3 CH_lal_224 4 4 0.0000501298
Oryza sativa ssp. japonica chr07 3 CH_osa_207 5 7 0.00000292827
Rosa chinensis RcHm_v2.0_Chr5 3 CH_rch_465 5 13 0.0000258135
Brassica napus C07 4 CH_bna_215 6 12 0.000000396803
Brassica oleracea C7 4 CH_bol_139 6 13 0.000000325194
Lupinus albus Lalb_Chr02 4 CH_lal_100 8 24 0.0000000415862
Lupinus albus Lalb_Chr02 4 CH_lal_224 4 4 0.0000501298
Oryza sativa ssp. japonica chr07 4 CH_osa_207 5 7 0.00000292827
Rosa chinensis RcHm_v2.0_Chr5 4 CH_rch_465 5 13 0.0000258135

Available child term results

Ontology identifier Description Number of clusters
GO:0005245 voltage-gated calcium channel activity 40
GO:0005249 voltage-gated potassium channel activity 16
GO:0005262 calcium channel activity 4
GO:0005267 potassium channel activity 20
GO:0005272 sodium channel activity 32
GO:0005384 manganese ion transmembrane transporter activity 2
GO:0005385 zinc ion transmembrane transporter activity 8
GO:0005388 P-type calcium transporter activity 68
GO:0005432 calcium:sodium antiporter activity 34
GO:0008273 calcium, potassium:sodium antiporter activity 2
GO:0008511 sodium:potassium:chloride symporter activity 4
GO:0008551 P-type cadmium transporter activity 2
GO:0009674 potassium:sodium symporter activity 14
GO:0010348 lithium:proton antiporter activity 8
GO:0010486 manganese:proton antiporter activity 10
GO:0015079 potassium ion transmembrane transporter activity 114
GO:0015081 sodium ion transmembrane transporter activity 8
GO:0015086 cadmium ion transmembrane transporter activity 2
GO:0015087 cobalt ion transmembrane transporter activity 8
GO:0015089 high-affinity copper ion transmembrane transporter activity 6
GO:0015095 magnesium ion transmembrane transporter activity 2
GO:0015269 calcium-activated potassium channel activity 30
GO:0015271 outward rectifier potassium channel activity 4
GO:0015368 calcium:cation antiporter activity 10
GO:0015369 calcium:proton antiporter activity 18
GO:0015385 sodium:proton antiporter activity 4
GO:0015386 potassium:proton antiporter activity 10
GO:0015444 P-type magnesium transporter activity 4
GO:0022821 potassium ion antiporter activity 20
GO:0022883 zinc efflux transmembrane transporter activity 8
GO:0099604 ligand-gated calcium channel activity 10

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001