Functional clusters
Information
- Type Gene Ontology
- Description ATPase-coupled transmembrane transporter activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR07 | 3 | CH_aox_211 | 4 | 5 | 0.000182795 |
| Arabidopsis thaliana | Chr3 | 3 | CH_ath_474 | 4 | 7 | 0.000193035 |
| Camellia sinensis var. sinensis | Chr12 | 3 | CH_camsi_417 | 5 | 7 | 0.00000936455 |
| Eucalyptus grandis | Chr05 | 3 | CH_egr_508 | 5 | 5 | 0.000000888312 |
| Fragaria x ananassa | Fvb5-1 | 3 | CH_fan_286 | 5 | 8 | 0.0000141283 |
| Fragaria vesca | Fvb5 | 3 | CH_fve_208 | 5 | 9 | 0.0000140406 |
| Gossypium raimondii | Chr05 | 3 | CH_gra_347 | 4 | 6 | 0.000594833 |
| Lupinus albus | Lalb_Chr02 | 3 | CH_lal_163 | 5 | 6 | 0.0000021165 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 3 | CH_lsa_407 | 4 | 5 | 0.000214618 |
| Magnolia biondii | Chr07 | 3 | CH_mbi_123 | 6 | 7 | 0.000000000933962 |
| Malus domestica | Chr14 | 3 | CH_mdo_499 | 5 | 12 | 0.00012047 |
| Manihot esculenta | Chromosome04 | 3 | CH_mes_338 | 7 | 43 | 0.000187954 |
| Quercus lobata | CM012294 | 3 | CH_qlo_629 | 5 | 7 | 0.0000105439 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_336 | 6 | 13 | 0.000000829692 |
| Vitis vinifera | chr2 | 3 | CH_vvi_78 | 8 | 11 | 0.0000000000153254 |
| Aquilegia oxysepala | CHR07 | 4 | CH_aox_211 | 4 | 5 | 0.000182795 |
| Arabidopsis thaliana | Chr3 | 4 | CH_ath_474 | 4 | 7 | 0.000193035 |
| Camellia sinensis var. sinensis | Chr12 | 4 | CH_camsi_417 | 5 | 7 | 0.00000936455 |
| Eucalyptus grandis | Chr05 | 4 | CH_egr_508 | 5 | 5 | 0.000000888312 |
| Fragaria x ananassa | Fvb5-1 | 4 | CH_fan_286 | 5 | 8 | 0.0000141283 |
| Fragaria vesca | Fvb5 | 4 | CH_fve_208 | 5 | 9 | 0.0000140406 |
| Gossypium raimondii | Chr05 | 4 | CH_gra_347 | 4 | 6 | 0.000594833 |
| Lupinus albus | Lalb_Chr02 | 4 | CH_lal_163 | 5 | 6 | 0.0000021165 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 4 | CH_lsa_407 | 4 | 5 | 0.000214618 |
| Magnolia biondii | Chr07 | 4 | CH_mbi_123 | 6 | 7 | 0.000000000933962 |
| Malus domestica | Chr14 | 4 | CH_mdo_499 | 5 | 12 | 0.00012047 |
| Manihot esculenta | Chromosome04 | 4 | CH_mes_338 | 7 | 43 | 0.000187954 |
| Quercus lobata | CM012294 | 4 | CH_qlo_629 | 5 | 7 | 0.0000105439 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_336 | 6 | 13 | 0.000000829692 |
| Vitis vinifera | chr2 | 4 | CH_vvi_78 | 8 | 11 | 0.0000000000153254 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0005388 | P-type calcium transporter activity | 68 |
| GO:0008551 | P-type cadmium transporter activity | 2 |
| GO:0008553 | P-type proton-exporting transporter activity | 10 |
| GO:0008559 | ABC-type xenobiotic transporter activity | 20 |
| GO:0015108 | chloride transmembrane transporter activity | 6 |
| GO:0015415 | ATPase-coupled phosphate ion transmembrane transporter activity | 14 |
| GO:0015431 | ABC-type glutathione S-conjugate transporter activity | 18 |
| GO:0015444 | P-type magnesium transporter activity | 4 |
| GO:0015462 | ABC-type protein transporter activity | 4 |
| GO:0019829 | ATPase-coupled cation transmembrane transporter activity | 22 |
| GO:0044604 | ABC-type phytochelatin transporter activity | 14 |
| GO:0046961 | proton-transporting ATPase activity, rotational mechanism | 6 |
| GO:0140359 | ABC-type transporter activity | 436 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |