Functional clusters
Information
- Type Gene Ontology
- Description channel activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrB02 | 3 | CH_bca_498 | 4 | 4 | 0.0000343351 |
| Brassica napus | C04 | 3 | CH_bna_411 | 4 | 4 | 0.0000359489 |
| Camellia sinensis var. sinensis | Chr8 | 3 | CH_camsi_133 | 7 | 9 | 0.000000000142149 |
| Cannabis sativa | NC_044379.1 | 3 | CH_cansat_124 | 5 | 6 | 0.000000212019 |
| Capsicum annuum | PGAv.1.6.scaffold298 | 3 | CH_can_97 | 6 | 6 | 0.000000000567019 |
| Corylus avellana | 2 | 3 | CH_cav_209 | 4 | 4 | 0.0000252481 |
| Chara braunii | BFEA01000017 | 3 | CH_cbr_68 | 4 | 7 | 0.00000580093 |
| Citrullus lanatus | CG_Chr04 | 3 | CH_cla_161 | 4 | 7 | 0.000594756 |
| Cucumis melo | chr05 | 3 | CH_cme_114 | 5 | 7 | 0.000000886838 |
| Corchorus olitorius | AWUE01016323.1 | 3 | CH_col_121 | 3 | 3 | 0.000913929 |
| Cucumis sativus L. | chr6 | 3 | CH_csa_83 | 6 | 9 | 0.0000000305904 |
| Durio zibethinus | NW_019168470.1 | 3 | CH_dzi_37 | 9 | 15 | 0.000000000000322262 |
| Erythranthe guttata | scaffold_8 | 3 | CH_egut_243 | 4 | 4 | 0.0000274968 |
| Fragaria x ananassa | Fvb6-1 | 3 | CH_fan_342 | 4 | 4 | 0.0000469717 |
| Fragaria x ananassa | Fvb6-1 | 3 | CH_fan_373 | 5 | 11 | 0.0000963636 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_130 | 6 | 10 | 0.00000008435 |
| Helianthus annuus | HanXRQChr15 | 3 | CH_han_307 | 6 | 11 | 0.000000776303 |
| Helianthus annuus | HanXRQChr13 | 3 | CH_han_341 | 5 | 6 | 0.00000182819 |
| Lotus japonicus | chr6 | 3 | CH_lja_126 | 5 | 6 | 0.000000741266 |
| Lonicera japonica | GWHAAZE00000009 | 3 | CH_lonja_462 | 4 | 5 | 0.000183495 |
| Magnolia biondii | Chr14 | 3 | CH_mbi_617 | 5 | 19 | 0.000486423 |
| Marchantia polymorpha | scaffold_44 | 3 | CH_mpo_60 | 4 | 4 | 0.00000518583 |
| Medicago truncatula | chr2 | 3 | CH_mtr_281 | 5 | 6 | 0.0000000809339 |
| Olea europaea | chr6 | 3 | CH_oeu_188 | 4 | 5 | 0.0000676934 |
| Petunia axillaris | Peaxi162Scf00413 | 3 | CH_pax_155 | 4 | 4 | 0.0000179498 |
| Populus trichocarpa | Chr09 | 3 | CH_ptr_205 | 5 | 5 | 0.000000265138 |
| Quercus lobata | 11 | 3 | CH_qlo_157 | 8 | 8 | 0.00000000000000787217 |
| Quercus lobata | 8 | 3 | CH_qlo_425 | 5 | 5 | 0.0000000839101 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 3 | CH_rch_299 | 5 | 6 | 0.000000252818 |
| Sechium edule | LG14 | 3 | CH_sed_167 | 5 | 11 | 0.0000693996 |
| Sequoiadendron giganteum | chr2 | 3 | CH_sgi_1045 | 4 | 4 | 0.0000881956 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_1046 | 4 | 4 | 0.0000881956 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_22 | 21 | 26 | 4.2622e-37 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_51 | 18 | 30 | 2.06306e-27 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_912 | 5 | 8 | 0.0000327664 |
| Solanum pennellii | Spenn-ch10 | 3 | CH_spe_255 | 4 | 5 | 0.0000232611 |
| Solanum tuberosum | ST4.03ch10 | 3 | CH_stu_300 | 4 | 4 | 0.00000693602 |
| Trochodendron aralioides | group13 | 3 | CH_tar_241 | 4 | 4 | 0.0000313438 |
| Brassica carinata | ChrB02 | 4 | CH_bca_498 | 4 | 4 | 0.0000343351 |
| Brassica napus | C04 | 4 | CH_bna_411 | 4 | 4 | 0.0000359489 |
| Camellia sinensis var. sinensis | Chr8 | 4 | CH_camsi_133 | 7 | 9 | 0.000000000142149 |
| Cannabis sativa | NC_044379.1 | 4 | CH_cansat_124 | 5 | 6 | 0.000000212019 |
| Capsicum annuum | PGAv.1.6.scaffold298 | 4 | CH_can_97 | 6 | 6 | 0.000000000567019 |
| Corylus avellana | 2 | 4 | CH_cav_209 | 4 | 4 | 0.0000252481 |
| Chara braunii | BFEA01000017 | 4 | CH_cbr_68 | 4 | 7 | 0.00000580093 |
| Citrullus lanatus | CG_Chr04 | 4 | CH_cla_161 | 4 | 7 | 0.000594756 |
| Cucumis melo | chr05 | 4 | CH_cme_114 | 5 | 7 | 0.000000886838 |
| Corchorus olitorius | AWUE01016323.1 | 4 | CH_col_121 | 3 | 3 | 0.000913929 |
| Cucumis sativus L. | chr6 | 4 | CH_csa_83 | 6 | 9 | 0.0000000305904 |
| Durio zibethinus | NW_019168470.1 | 4 | CH_dzi_37 | 9 | 15 | 0.000000000000322262 |
| Erythranthe guttata | scaffold_8 | 4 | CH_egut_243 | 4 | 4 | 0.0000274968 |
| Fragaria x ananassa | Fvb6-1 | 4 | CH_fan_342 | 4 | 4 | 0.0000469717 |
| Fragaria x ananassa | Fvb6-1 | 4 | CH_fan_373 | 5 | 11 | 0.0000963636 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_130 | 6 | 10 | 0.00000008435 |
| Helianthus annuus | HanXRQChr15 | 4 | CH_han_307 | 6 | 11 | 0.000000776303 |
| Helianthus annuus | HanXRQChr13 | 4 | CH_han_341 | 5 | 6 | 0.00000182819 |
| Lotus japonicus | chr6 | 4 | CH_lja_126 | 5 | 6 | 0.000000741266 |
| Lonicera japonica | GWHAAZE00000009 | 4 | CH_lonja_462 | 4 | 5 | 0.000183495 |
| Magnolia biondii | Chr14 | 4 | CH_mbi_617 | 5 | 19 | 0.000486423 |
| Marchantia polymorpha | scaffold_44 | 4 | CH_mpo_60 | 4 | 4 | 0.00000518583 |
| Medicago truncatula | chr2 | 4 | CH_mtr_281 | 5 | 6 | 0.0000000809339 |
| Olea europaea | chr6 | 4 | CH_oeu_188 | 4 | 5 | 0.0000676934 |
| Petunia axillaris | Peaxi162Scf00413 | 4 | CH_pax_155 | 4 | 4 | 0.0000179498 |
| Populus trichocarpa | Chr09 | 4 | CH_ptr_205 | 5 | 5 | 0.000000265138 |
| Quercus lobata | 11 | 4 | CH_qlo_157 | 8 | 8 | 0.00000000000000787217 |
| Quercus lobata | 8 | 4 | CH_qlo_425 | 5 | 5 | 0.0000000839101 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 4 | CH_rch_299 | 5 | 6 | 0.000000252818 |
| Sechium edule | LG14 | 4 | CH_sed_167 | 5 | 11 | 0.0000693996 |
| Sequoiadendron giganteum | chr2 | 4 | CH_sgi_1045 | 4 | 4 | 0.0000881956 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_1046 | 4 | 4 | 0.0000881956 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_22 | 21 | 26 | 4.2622e-37 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_51 | 18 | 30 | 2.06306e-27 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_912 | 5 | 8 | 0.0000327664 |
| Solanum pennellii | Spenn-ch10 | 4 | CH_spe_255 | 4 | 5 | 0.0000232611 |
| Solanum tuberosum | ST4.03ch10 | 4 | CH_stu_300 | 4 | 4 | 0.00000693602 |
| Trochodendron aralioides | group13 | 4 | CH_tar_241 | 4 | 4 | 0.0000313438 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0004970 | ionotropic glutamate receptor activity | 4 |
| GO:0005216 | ion channel activity | 60 |
| GO:0005222 | intracellular cAMP-activated cation channel activity | 4 |
| GO:0005223 | intracellular cGMP-activated cation channel activity | 4 |
| GO:0005227 | calcium activated cation channel activity | 42 |
| GO:0005230 | extracellular ligand-gated ion channel activity | 2 |
| GO:0005245 | voltage-gated calcium channel activity | 40 |
| GO:0005247 | voltage-gated chloride channel activity | 16 |
| GO:0005249 | voltage-gated potassium channel activity | 16 |
| GO:0005254 | chloride channel activity | 8 |
| GO:0005262 | calcium channel activity | 4 |
| GO:0005267 | potassium channel activity | 20 |
| GO:0005272 | sodium channel activity | 32 |
| GO:0008308 | voltage-gated anion channel activity | 14 |
| GO:0008381 | mechanosensitive ion channel activity | 10 |
| GO:0015250 | water channel activity | 2 |
| GO:0015269 | calcium-activated potassium channel activity | 30 |
| GO:0015271 | outward rectifier potassium channel activity | 4 |
| GO:0015276 | ligand-gated ion channel activity | 324 |
| GO:0015288 | porin activity | 2 |
| GO:0022843 | voltage-gated cation channel activity | 2 |
| GO:0030171 | voltage-gated proton channel activity | 2 |
| GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | 2 |
| GO:0099604 | ligand-gated calcium channel activity | 10 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |