Functional clusters
Information
- Type Gene Ontology
- Description nitrate transmembrane transporter activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 3 | CH_acertr_252 | 3 | 3 | 0.0000171465 |
| Acer truncatum | chr3 | 3 | CH_acertr_95 | 4 | 4 | 0.0000000132975 |
| Acer truncatum | chr11 | 3 | CH_acertr_96 | 4 | 4 | 0.0000000132975 |
| Aquilegia oxysepala | CHR03 | 3 | CH_aox_153 | 3 | 4 | 0.0000314762 |
| Brassica carinata | ChrC01 | 3 | CH_bca_165 | 5 | 13 | 0.0000000141078 |
| Brassica carinata | ChrB01 | 3 | CH_bca_296 | 4 | 7 | 0.000000610013 |
| Brassica napus | C03 | 3 | CH_bna_130 | 5 | 11 | 0.00000000366546 |
| Brassica napus | C09 | 3 | CH_bna_515 | 3 | 5 | 0.000236279 |
| Brassica oleracea | C3 | 3 | CH_bol_208 | 4 | 14 | 0.00000770567 |
| Coffea canephora | chr1 | 3 | CH_ccan_67 | 4 | 28 | 0.0000000229732 |
| Ceratophyllum demersum | 5 | 3 | CH_cde_75 | 3 | 3 | 0.00000906696 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 3 | CH_cqu_316 | 3 | 3 | 0.0000332727 |
| Daucus carota | DCARv2_Chr2 | 3 | CH_dca_6 | 12 | 22 | 1.17892e-25 |
| Erythranthe guttata | scaffold_4 | 3 | CH_egut_102 | 5 | 7 | 0.000000000890255 |
| Erythranthe guttata | scaffold_17 | 3 | CH_egut_253 | 3 | 3 | 0.0000394481 |
| Fragaria x ananassa | Fvb5-3 | 3 | CH_fan_275 | 3 | 3 | 0.0000094622 |
| Lonicera japonica | GWHAAZE00000001 | 3 | CH_lonja_90 | 6 | 7 | 0.0000000000000279264 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 3 | CH_lsa_198 | 4 | 6 | 0.000000219508 |
| Malus domestica | Chr11 | 3 | CH_mdo_326 | 3 | 3 | 0.00000630941 |
| Marchantia polymorpha | scaffold_20 | 3 | CH_mpo_1 | 14 | 15 | 2.59749e-37 |
| Physcomitrium patens | Chr22 | 3 | CH_ppa_75 | 3 | 5 | 0.0000315166 |
| Solanum pennellii | Spenn-ch06 | 3 | CH_spe_207 | 3 | 3 | 0.00000394697 |
| Acer truncatum | chr8 | 4 | CH_acertr_252 | 3 | 3 | 0.0000171465 |
| Acer truncatum | chr3 | 4 | CH_acertr_95 | 4 | 4 | 0.0000000132975 |
| Acer truncatum | chr11 | 4 | CH_acertr_96 | 4 | 4 | 0.0000000132975 |
| Aquilegia oxysepala | CHR03 | 4 | CH_aox_153 | 3 | 4 | 0.0000314762 |
| Brassica carinata | ChrC01 | 4 | CH_bca_165 | 5 | 13 | 0.0000000141078 |
| Brassica carinata | ChrB01 | 4 | CH_bca_296 | 4 | 7 | 0.000000610013 |
| Brassica napus | C03 | 4 | CH_bna_130 | 5 | 11 | 0.00000000366546 |
| Brassica napus | C09 | 4 | CH_bna_515 | 3 | 5 | 0.000236279 |
| Brassica oleracea | C3 | 4 | CH_bol_208 | 4 | 14 | 0.00000770567 |
| Coffea canephora | chr1 | 4 | CH_ccan_67 | 4 | 28 | 0.0000000229732 |
| Ceratophyllum demersum | 5 | 4 | CH_cde_75 | 3 | 3 | 0.00000906696 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 4 | CH_cqu_316 | 3 | 3 | 0.0000332727 |
| Daucus carota | DCARv2_Chr2 | 4 | CH_dca_6 | 12 | 22 | 1.17892e-25 |
| Erythranthe guttata | scaffold_4 | 4 | CH_egut_102 | 5 | 7 | 0.000000000890255 |
| Erythranthe guttata | scaffold_17 | 4 | CH_egut_253 | 3 | 3 | 0.0000394481 |
| Fragaria x ananassa | Fvb5-3 | 4 | CH_fan_275 | 3 | 3 | 0.0000094622 |
| Lonicera japonica | GWHAAZE00000001 | 4 | CH_lonja_90 | 6 | 7 | 0.0000000000000279264 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 4 | CH_lsa_198 | 4 | 6 | 0.000000219508 |
| Malus domestica | Chr11 | 4 | CH_mdo_326 | 3 | 3 | 0.00000630941 |
| Marchantia polymorpha | scaffold_20 | 4 | CH_mpo_1 | 14 | 15 | 2.59749e-37 |
| Physcomitrium patens | Chr22 | 4 | CH_ppa_75 | 3 | 5 | 0.0000315166 |
| Solanum pennellii | Spenn-ch06 | 4 | CH_spe_207 | 3 | 3 | 0.00000394697 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009671 | nitrate:proton symporter activity | 4 |
| GO:0010542 | nitrate efflux transmembrane transporter activity | 8 |
| GO:0080054 | low-affinity nitrate transmembrane transporter activity | 40 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |