Functional clusters
Information
- Type Gene Ontology
- Description ion channel activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-8 | 3 | CH_aar_114 | 4 | 4 | 0.00000665233 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 3 | CH_arhy_659 | 7 | 69 | 0.000622759 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 3 | CH_arhy_714 | 4 | 8 | 0.000942985 |
| Brassica carinata | ChrB06 | 3 | CH_bca_645 | 7 | 57 | 0.000141182 |
| Cannabis sativa | NC_044374.1 | 3 | CH_cansat_360 | 4 | 10 | 0.000839095 |
| Corylus avellana | 1 | 3 | CH_cav_68 | 9 | 30 | 0.000000000423473 |
| Citrus clementina | scaffold_9 | 3 | CH_ccl_70 | 10 | 27 | 0.0000000000008387 |
| Cardamine hirsuta | Chr4 | 3 | CH_chi_206 | 4 | 5 | 0.0000433694 |
| Carya illinoinensis | Chr01 | 3 | CH_cil_163 | 6 | 8 | 0.0000000125867 |
| Eucalyptus grandis | Chr10 | 3 | CH_egr_141 | 9 | 9 | 7.46401e-17 |
| Fragaria x ananassa | Fvb7-3 | 3 | CH_fan_403 | 4 | 5 | 0.000165454 |
| Fragaria vesca | Fvb7 | 3 | CH_fve_171 | 6 | 15 | 0.00000182977 |
| Glycine max | Gm16 | 3 | CH_gma_245 | 4 | 4 | 0.0000121895 |
| Glycine max | Gm09 | 3 | CH_gma_246 | 4 | 4 | 0.0000121895 |
| Lotus japonicus | chr2 | 3 | CH_lja_90 | 5 | 5 | 0.0000000358225 |
| Malus domestica | Chr07 | 3 | CH_mdo_184 | 7 | 18 | 0.0000000302053 |
| Malus domestica | Chr01 | 3 | CH_mdo_61 | 12 | 55 | 0.000000000000331315 |
| Manihot esculenta | Chromosome04 | 3 | CH_mes_238 | 4 | 4 | 0.00000825401 |
| Medicago truncatula | chr6 | 3 | CH_mtr_444 | 5 | 16 | 0.0000166858 |
| Prunus persica | Pp07 | 3 | CH_ppe_284 | 4 | 4 | 0.0000273346 |
| Prunus persica | Pp02 | 3 | CH_ppe_85 | 9 | 16 | 0.00000000000149836 |
| Phaseolus vulgaris | Chr04 | 3 | CH_pvu_68 | 6 | 6 | 0.0000000000975892 |
| Quercus lobata | 11 | 3 | CH_qlo_177 | 12 | 50 | 0.000000000000139788 |
| Quercus lobata | 1 | 3 | CH_qlo_310 | 6 | 7 | 0.00000000176558 |
| Quercus lobata | 9 | 3 | CH_qlo_358 | 7 | 16 | 0.000000011859 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 3 | CH_rch_98 | 11 | 34 | 0.000000000000081951 |
| Sechium edule | LG12 | 3 | CH_sed_166 | 4 | 5 | 0.0000655744 |
| Sechium edule | LG07 | 3 | CH_sed_98 | 5 | 6 | 0.000000359281 |
| Tripterygium wilfordii | NC_052249.1 | 3 | CH_twi_182 | 4 | 5 | 0.0000228168 |
| Vigna mungo | CM024077.1 | 3 | CH_vmu_85 | 5 | 6 | 0.000000100258 |
| Aethionema arabicum | LG-8 | 4 | CH_aar_114 | 4 | 4 | 0.00000665233 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 4 | CH_arhy_659 | 7 | 69 | 0.000622759 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 4 | CH_arhy_714 | 4 | 8 | 0.000942985 |
| Brassica carinata | ChrB06 | 4 | CH_bca_645 | 7 | 57 | 0.000141182 |
| Cannabis sativa | NC_044374.1 | 4 | CH_cansat_360 | 4 | 10 | 0.000839095 |
| Corylus avellana | 1 | 4 | CH_cav_68 | 9 | 30 | 0.000000000423473 |
| Citrus clementina | scaffold_9 | 4 | CH_ccl_70 | 10 | 27 | 0.0000000000008387 |
| Cardamine hirsuta | Chr4 | 4 | CH_chi_206 | 4 | 5 | 0.0000433694 |
| Carya illinoinensis | Chr01 | 4 | CH_cil_163 | 6 | 8 | 0.0000000125867 |
| Eucalyptus grandis | Chr10 | 4 | CH_egr_141 | 9 | 9 | 7.46401e-17 |
| Fragaria x ananassa | Fvb7-3 | 4 | CH_fan_403 | 4 | 5 | 0.000165454 |
| Fragaria vesca | Fvb7 | 4 | CH_fve_171 | 6 | 15 | 0.00000182977 |
| Glycine max | Gm16 | 4 | CH_gma_245 | 4 | 4 | 0.0000121895 |
| Glycine max | Gm09 | 4 | CH_gma_246 | 4 | 4 | 0.0000121895 |
| Lotus japonicus | chr2 | 4 | CH_lja_90 | 5 | 5 | 0.0000000358225 |
| Malus domestica | Chr07 | 4 | CH_mdo_184 | 7 | 18 | 0.0000000302053 |
| Malus domestica | Chr01 | 4 | CH_mdo_61 | 12 | 55 | 0.000000000000331315 |
| Manihot esculenta | Chromosome04 | 4 | CH_mes_238 | 4 | 4 | 0.00000825401 |
| Medicago truncatula | chr6 | 4 | CH_mtr_444 | 5 | 16 | 0.0000166858 |
| Prunus persica | Pp07 | 4 | CH_ppe_284 | 4 | 4 | 0.0000273346 |
| Prunus persica | Pp02 | 4 | CH_ppe_85 | 9 | 16 | 0.00000000000149836 |
| Phaseolus vulgaris | Chr04 | 4 | CH_pvu_68 | 6 | 6 | 0.0000000000975892 |
| Quercus lobata | 11 | 4 | CH_qlo_177 | 12 | 50 | 0.000000000000139788 |
| Quercus lobata | 1 | 4 | CH_qlo_310 | 6 | 7 | 0.00000000176558 |
| Quercus lobata | 9 | 4 | CH_qlo_358 | 7 | 16 | 0.000000011859 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 4 | CH_rch_98 | 11 | 34 | 0.000000000000081951 |
| Sechium edule | LG12 | 4 | CH_sed_166 | 4 | 5 | 0.0000655744 |
| Sechium edule | LG07 | 4 | CH_sed_98 | 5 | 6 | 0.000000359281 |
| Tripterygium wilfordii | NC_052249.1 | 4 | CH_twi_182 | 4 | 5 | 0.0000228168 |
| Vigna mungo | CM024077.1 | 4 | CH_vmu_85 | 5 | 6 | 0.000000100258 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0004970 | ionotropic glutamate receptor activity | 4 |
| GO:0005222 | intracellular cAMP-activated cation channel activity | 4 |
| GO:0005223 | intracellular cGMP-activated cation channel activity | 4 |
| GO:0005227 | calcium activated cation channel activity | 42 |
| GO:0005230 | extracellular ligand-gated ion channel activity | 2 |
| GO:0005245 | voltage-gated calcium channel activity | 40 |
| GO:0005247 | voltage-gated chloride channel activity | 16 |
| GO:0005249 | voltage-gated potassium channel activity | 16 |
| GO:0005254 | chloride channel activity | 8 |
| GO:0005262 | calcium channel activity | 4 |
| GO:0005267 | potassium channel activity | 20 |
| GO:0005272 | sodium channel activity | 32 |
| GO:0008308 | voltage-gated anion channel activity | 14 |
| GO:0008381 | mechanosensitive ion channel activity | 10 |
| GO:0015269 | calcium-activated potassium channel activity | 30 |
| GO:0015271 | outward rectifier potassium channel activity | 4 |
| GO:0015276 | ligand-gated ion channel activity | 324 |
| GO:0022843 | voltage-gated cation channel activity | 2 |
| GO:0030171 | voltage-gated proton channel activity | 2 |
| GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | 2 |
| GO:0099604 | ligand-gated calcium channel activity | 10 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |