Functional clusters
Information
- Type Gene Ontology
- Description P-type calcium transporter activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 3 | CH_bvu_120 | 3 | 3 | 0.00000294069 |
| Camellia sinensis var. sinensis | Chr5 | 3 | CH_camsi_17 | 11 | 28 | 4.40864e-24 |
| Corylus avellana | 9 | 3 | CH_cav_230 | 3 | 6 | 0.0000503877 |
| Citrus clementina | scaffold_5 | 3 | CH_ccl_270 | 3 | 4 | 0.0000329305 |
| Carpinus fangiana | Cfa02 | 3 | CH_cfa_101 | 4 | 6 | 0.000000075701 |
| Carpinus fangiana | Cfa03 | 3 | CH_cfa_60 | 5 | 8 | 0.000000000160474 |
| Carya illinoinensis | Chr02 | 3 | CH_cil_116 | 5 | 5 | 0.0000000000157783 |
| Carya illinoinensis | Chr07 | 3 | CH_cil_166 | 4 | 4 | 0.0000000195797 |
| Carya illinoinensis | Chr01 | 3 | CH_cil_362 | 3 | 4 | 0.0000935292 |
| Daucus carota | DCARv2_Chr8 | 3 | CH_dca_330 | 3 | 6 | 0.000316727 |
| Davidia involucrata | GWHABJS00000002 | 3 | CH_din_45 | 6 | 10 | 0.000000000000700995 |
| Durio zibethinus | NW_019168004.1 | 3 | CH_dzi_99 | 4 | 5 | 0.0000000610845 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 3 | CH_eca_294 | 3 | 8 | 0.000114866 |
| Eucalyptus grandis | Chr08 | 3 | CH_egr_25 | 12 | 13 | 2.27432e-31 |
| Eucalyptus grandis | Chr08 | 3 | CH_egr_31 | 12 | 15 | 7.94847e-30 |
| Fragaria x ananassa | Fvb4-3 | 3 | CH_fan_289 | 4 | 18 | 0.0000144617 |
| Fragaria x ananassa | Fvb4-2 | 3 | CH_fan_78 | 5 | 10 | 0.000000000519536 |
| Fragaria vesca | Fvb4 | 3 | CH_fve_214 | 3 | 5 | 0.0000189387 |
| Lonicera japonica | GWHAAZE00000003 | 3 | CH_lonja_146 | 5 | 8 | 0.0000000000836732 |
| Nelumbo nucifera | chr6 | 3 | CH_nnu_38 | 5 | 8 | 0.0000000000350252 |
| Punica granatum | NC_045128.1 | 3 | CH_pgr_240 | 3 | 5 | 0.0000573821 |
| Prunus persica | Pp01 | 3 | CH_ppe_153 | 4 | 4 | 0.00000000381103 |
| Prunus persica | Pp07 | 3 | CH_ppe_261 | 3 | 3 | 0.00000681132 |
| Quercus lobata | 6 | 3 | CH_qlo_245 | 5 | 5 | 0.0000000000513032 |
| Quercus lobata | 5 | 3 | CH_qlo_267 | 7 | 33 | 0.000000000200954 |
| Quercus lobata | 11 | 3 | CH_qlo_276 | 5 | 6 | 0.00000000030756 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_29 | 10 | 30 | 1.76107e-22 |
| Rhododendron simsii | chr02 | 3 | CH_rsi_143 | 5 | 12 | 0.00000000119453 |
| Solanum pennellii | Spenn-ch09 | 3 | CH_spe_208 | 3 | 4 | 0.00000432 |
| Solanum tuberosum | ST4.03ch02 | 3 | CH_stu_288 | 3 | 3 | 0.00000449071 |
| Solanum tuberosum | ST4.03ch09 | 3 | CH_stu_34 | 7 | 9 | 3.97906e-18 |
| Trochodendron aralioides | group2 | 3 | CH_tar_11 | 9 | 17 | 3.03603e-19 |
| Trochodendron aralioides | group17 | 3 | CH_tar_55 | 6 | 15 | 0.000000000117369 |
| Theobroma cacao | Chromosome_5 | 3 | CH_tca_225 | 3 | 4 | 0.0000146386 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 4 | CH_bvu_120 | 3 | 3 | 0.00000294069 |
| Camellia sinensis var. sinensis | Chr5 | 4 | CH_camsi_17 | 11 | 28 | 4.40864e-24 |
| Corylus avellana | 9 | 4 | CH_cav_230 | 3 | 6 | 0.0000503877 |
| Citrus clementina | scaffold_5 | 4 | CH_ccl_270 | 3 | 4 | 0.0000329305 |
| Carpinus fangiana | Cfa02 | 4 | CH_cfa_101 | 4 | 6 | 0.000000075701 |
| Carpinus fangiana | Cfa03 | 4 | CH_cfa_60 | 5 | 8 | 0.000000000160474 |
| Carya illinoinensis | Chr02 | 4 | CH_cil_116 | 5 | 5 | 0.0000000000157783 |
| Carya illinoinensis | Chr07 | 4 | CH_cil_166 | 4 | 4 | 0.0000000195797 |
| Carya illinoinensis | Chr01 | 4 | CH_cil_362 | 3 | 4 | 0.0000935292 |
| Daucus carota | DCARv2_Chr8 | 4 | CH_dca_330 | 3 | 6 | 0.000316727 |
| Davidia involucrata | GWHABJS00000002 | 4 | CH_din_45 | 6 | 10 | 0.000000000000700995 |
| Durio zibethinus | NW_019168004.1 | 4 | CH_dzi_99 | 4 | 5 | 0.0000000610845 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 4 | CH_eca_294 | 3 | 8 | 0.000114866 |
| Eucalyptus grandis | Chr08 | 4 | CH_egr_25 | 12 | 13 | 2.27432e-31 |
| Eucalyptus grandis | Chr08 | 4 | CH_egr_31 | 12 | 15 | 7.94847e-30 |
| Fragaria x ananassa | Fvb4-3 | 4 | CH_fan_289 | 4 | 18 | 0.0000144617 |
| Fragaria x ananassa | Fvb4-2 | 4 | CH_fan_78 | 5 | 10 | 0.000000000519536 |
| Fragaria vesca | Fvb4 | 4 | CH_fve_214 | 3 | 5 | 0.0000189387 |
| Lonicera japonica | GWHAAZE00000003 | 4 | CH_lonja_146 | 5 | 8 | 0.0000000000836732 |
| Nelumbo nucifera | chr6 | 4 | CH_nnu_38 | 5 | 8 | 0.0000000000350252 |
| Punica granatum | NC_045128.1 | 4 | CH_pgr_240 | 3 | 5 | 0.0000573821 |
| Prunus persica | Pp01 | 4 | CH_ppe_153 | 4 | 4 | 0.00000000381103 |
| Prunus persica | Pp07 | 4 | CH_ppe_261 | 3 | 3 | 0.00000681132 |
| Quercus lobata | 6 | 4 | CH_qlo_245 | 5 | 5 | 0.0000000000513032 |
| Quercus lobata | 5 | 4 | CH_qlo_267 | 7 | 33 | 0.000000000200954 |
| Quercus lobata | 11 | 4 | CH_qlo_276 | 5 | 6 | 0.00000000030756 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_29 | 10 | 30 | 1.76107e-22 |
| Rhododendron simsii | chr02 | 4 | CH_rsi_143 | 5 | 12 | 0.00000000119453 |
| Solanum pennellii | Spenn-ch09 | 4 | CH_spe_208 | 3 | 4 | 0.00000432 |
| Solanum tuberosum | ST4.03ch02 | 4 | CH_stu_288 | 3 | 3 | 0.00000449071 |
| Solanum tuberosum | ST4.03ch09 | 4 | CH_stu_34 | 7 | 9 | 3.97906e-18 |
| Trochodendron aralioides | group2 | 4 | CH_tar_11 | 9 | 17 | 3.03603e-19 |
| Trochodendron aralioides | group17 | 4 | CH_tar_55 | 6 | 15 | 0.000000000117369 |
| Theobroma cacao | Chromosome_5 | 4 | CH_tca_225 | 3 | 4 | 0.0000146386 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |