Functional clusters
Information
- Type Gene Ontology
- Description carnitine transmembrane transporter activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica napus | C02 | 3 | CH_bna_624 | 2 | 3 | 0.000556834 |
| Brassica oleracea | C2 | 3 | CH_bol_283 | 2 | 2 | 0.0000980584 |
| Brassica rapa | A02 | 3 | CH_bra_294 | 2 | 4 | 0.000772709 |
| Carya illinoinensis | Chr16 | 3 | CH_cil_120 | 4 | 5 | 0.0000000000178604 |
| Cucumis melo | chr04 | 3 | CH_cme_208 | 2 | 2 | 0.000200133 |
| Cucumis sativus L. | chr3 | 3 | CH_csa_232 | 2 | 2 | 0.000250428 |
| Fragaria x ananassa | Fvb3-4 | 3 | CH_fan_507 | 2 | 4 | 0.000555093 |
| Fragaria vesca | Fvb3 | 3 | CH_fve_285 | 2 | 3 | 0.000176725 |
| Gossypium hirsutum | D12 | 3 | CH_ghi_188 | 3 | 3 | 0.0000000106947 |
| Gossypium hirsutum | A12 | 3 | CH_ghi_534 | 2 | 2 | 0.000267016 |
| Gossypium raimondii | Chr08 | 3 | CH_gra_94 | 3 | 3 | 0.00000000431127 |
| Magnolia biondii | Chr03 | 3 | CH_mbi_536 | 2 | 4 | 0.000291382 |
| Malus domestica | Chr05 | 3 | CH_mdo_671 | 2 | 4 | 0.000682538 |
| Nicotiana tabacum | Nitab4.5_0000161 | 3 | CH_nta_74 | 3 | 12 | 0.0000396854 |
| Prunus persica | Pp04 | 3 | CH_ppe_35 | 6 | 8 | 1.45564e-18 |
| Papaver somniferum | NC_039359.1 | 3 | CH_pso_520 | 2 | 2 | 0.000135176 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_164 | 4 | 12 | 0.0000000000940734 |
| Rhododendron simsii | chr01 | 3 | CH_rsi_356 | 2 | 2 | 0.0000645307 |
| Simmondsia chinensis | GWHAASQ00000003 | 3 | CH_sci_37 | 3 | 3 | 0.0000000108744 |
| Vaccinium macrocarpon | scaffold00295_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_277 | 2 | 3 | 0.000278759 |
| Vanilla planifolia | CM028154.1 | 3 | CH_vpl_315 | 2 | 2 | 0.000443328 |
| Brassica napus | C02 | 4 | CH_bna_624 | 2 | 3 | 0.000556834 |
| Brassica oleracea | C2 | 4 | CH_bol_283 | 2 | 2 | 0.0000980584 |
| Brassica rapa | A02 | 4 | CH_bra_294 | 2 | 4 | 0.000772709 |
| Carya illinoinensis | Chr16 | 4 | CH_cil_120 | 4 | 5 | 0.0000000000178604 |
| Cucumis melo | chr04 | 4 | CH_cme_208 | 2 | 2 | 0.000200133 |
| Cucumis sativus L. | chr3 | 4 | CH_csa_232 | 2 | 2 | 0.000250428 |
| Fragaria x ananassa | Fvb3-4 | 4 | CH_fan_507 | 2 | 4 | 0.000555093 |
| Fragaria vesca | Fvb3 | 4 | CH_fve_285 | 2 | 3 | 0.000176725 |
| Gossypium hirsutum | D12 | 4 | CH_ghi_188 | 3 | 3 | 0.0000000106947 |
| Gossypium hirsutum | A12 | 4 | CH_ghi_534 | 2 | 2 | 0.000267016 |
| Gossypium raimondii | Chr08 | 4 | CH_gra_94 | 3 | 3 | 0.00000000431127 |
| Magnolia biondii | Chr03 | 4 | CH_mbi_536 | 2 | 4 | 0.000291382 |
| Malus domestica | Chr05 | 4 | CH_mdo_671 | 2 | 4 | 0.000682538 |
| Nicotiana tabacum | Nitab4.5_0000161 | 4 | CH_nta_74 | 3 | 12 | 0.0000396854 |
| Prunus persica | Pp04 | 4 | CH_ppe_35 | 6 | 8 | 1.45564e-18 |
| Papaver somniferum | NC_039359.1 | 4 | CH_pso_520 | 2 | 2 | 0.000135176 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_164 | 4 | 12 | 0.0000000000940734 |
| Rhododendron simsii | chr01 | 4 | CH_rsi_356 | 2 | 2 | 0.0000645307 |
| Simmondsia chinensis | GWHAASQ00000003 | 4 | CH_sci_37 | 3 | 3 | 0.0000000108744 |
| Vaccinium macrocarpon | scaffold00295_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_277 | 2 | 3 | 0.000278759 |
| Vanilla planifolia | CM028154.1 | 4 | CH_vpl_315 | 2 | 2 | 0.000443328 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |