Functional clusters
Information
- Type Gene Ontology
- Description tripeptide transmembrane transporter activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr13 | 3 | CH_acertr_184 | 3 | 3 | 0.00000123008 |
| Arabidopsis lyrata | scaffold_1 | 3 | CH_aly_139 | 3 | 3 | 0.00000365965 |
| Arabidopsis lyrata | scaffold_2 | 3 | CH_aly_75 | 4 | 6 | 0.0000000235365 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_374 | 3 | 8 | 0.0000468448 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_99 | 4 | 6 | 0.0000000025177 |
| Brassica carinata | ChrB03 | 3 | CH_bca_99 | 5 | 8 | 0.000000000120085 |
| Brassica napus | A07 | 3 | CH_bna_135 | 4 | 4 | 0.00000000519412 |
| Brassica oleracea | C6 | 3 | CH_bol_97 | 4 | 6 | 0.000000032156 |
| Carpinus fangiana | Cfa06 | 3 | CH_cfa_111 | 4 | 6 | 0.000000116877 |
| Carpinus fangiana | Cfa05 | 3 | CH_cfa_15 | 9 | 16 | 5.14814e-21 |
| Cardamine hirsuta | Chr2 | 3 | CH_chi_107 | 4 | 7 | 0.0000000472874 |
| Cardamine hirsuta | Chr1 | 3 | CH_chi_198 | 3 | 5 | 0.000032586 |
| Capsella rubella | scaffold_1 | 3 | CH_cru_169 | 3 | 3 | 0.00000545299 |
| Capsella rubella | scaffold_2 | 3 | CH_cru_205 | 3 | 5 | 0.000054484 |
| Capsella rubella | scaffold_5 | 3 | CH_cru_343 | 4 | 54 | 0.000864468 |
| Durio zibethinus | NW_019168004.1 | 3 | CH_dzi_73 | 4 | 4 | 0.00000000115785 |
| Erythranthe guttata | scaffold_3 | 3 | CH_egut_188 | 3 | 3 | 0.00000095439 |
| Helianthus annuus | HanXRQChr02 | 3 | CH_han_224 | 4 | 8 | 0.0000000288169 |
| Hydrangea macrophylla | Hma1.2p1_0112F.1 | 3 | CH_hma_293 | 2 | 2 | 0.000666519 |
| Lotus japonicus | chr1 | 3 | CH_lja_147 | 3 | 3 | 0.00000219371 |
| Manihot esculenta | Chromosome18 | 3 | CH_mes_161 | 4 | 7 | 0.0000000730805 |
| Medicago truncatula | chr7 | 3 | CH_mtr_112 | 6 | 16 | 0.00000000000114171 |
| Medicago truncatula | chr4 | 3 | CH_mtr_222 | 4 | 5 | 0.00000000622506 |
| Medicago truncatula | chr1 | 3 | CH_mtr_534 | 3 | 7 | 0.000117733 |
| Nelumbo nucifera | chr3 | 3 | CH_nnu_155 | 3 | 4 | 0.0000113566 |
| Nelumbo nucifera | chr1 | 3 | CH_nnu_60 | 4 | 5 | 0.00000000512865 |
| Olea europaea | chr20 | 3 | CH_oeu_34 | 4 | 6 | 0.000000000862205 |
| Papaver somniferum | NC_039360.1 | 3 | CH_pso_177 | 5 | 16 | 0.00000000234131 |
| Papaver somniferum | NC_039365.1 | 3 | CH_pso_38 | 8 | 21 | 3.41736e-18 |
| Populus trichocarpa | Chr13 | 3 | CH_ptr_113 | 5 | 7 | 0.0000000000357482 |
| Populus trichocarpa | Chr19 | 3 | CH_ptr_266 | 3 | 3 | 0.0000066652 |
| Quercus lobata | 1 | 3 | CH_qlo_625 | 3 | 3 | 0.00000919636 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_18 | 11 | 24 | 3.47329e-28 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 3 | CH_rch_385 | 3 | 3 | 0.00000317059 |
| Rhododendron simsii | chr12 | 3 | CH_rsi_135 | 4 | 4 | 0.000000000399087 |
| Rhododendron simsii | chr04 | 3 | CH_rsi_307 | 3 | 5 | 0.0000137355 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_757 | 4 | 11 | 0.00000200216 |
| Tarenaya hassleriana | NW_010969032.1 | 3 | CH_tha_65 | 3 | 3 | 0.00000161 |
| Acer truncatum | chr13 | 4 | CH_acertr_184 | 3 | 3 | 0.00000123008 |
| Arabidopsis lyrata | scaffold_1 | 4 | CH_aly_139 | 3 | 3 | 0.00000365965 |
| Arabidopsis lyrata | scaffold_2 | 4 | CH_aly_75 | 4 | 6 | 0.0000000235365 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_374 | 3 | 8 | 0.0000468448 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_99 | 4 | 6 | 0.0000000025177 |
| Brassica carinata | ChrB03 | 4 | CH_bca_99 | 5 | 8 | 0.000000000120085 |
| Brassica napus | A07 | 4 | CH_bna_135 | 4 | 4 | 0.00000000519412 |
| Brassica oleracea | C6 | 4 | CH_bol_97 | 4 | 6 | 0.000000032156 |
| Carpinus fangiana | Cfa06 | 4 | CH_cfa_111 | 4 | 6 | 0.000000116877 |
| Carpinus fangiana | Cfa05 | 4 | CH_cfa_15 | 9 | 16 | 5.14814e-21 |
| Cardamine hirsuta | Chr2 | 4 | CH_chi_107 | 4 | 7 | 0.0000000472874 |
| Cardamine hirsuta | Chr1 | 4 | CH_chi_198 | 3 | 5 | 0.000032586 |
| Capsella rubella | scaffold_1 | 4 | CH_cru_169 | 3 | 3 | 0.00000545299 |
| Capsella rubella | scaffold_2 | 4 | CH_cru_205 | 3 | 5 | 0.000054484 |
| Capsella rubella | scaffold_5 | 4 | CH_cru_343 | 4 | 54 | 0.000864468 |
| Durio zibethinus | NW_019168004.1 | 4 | CH_dzi_73 | 4 | 4 | 0.00000000115785 |
| Erythranthe guttata | scaffold_3 | 4 | CH_egut_188 | 3 | 3 | 0.00000095439 |
| Helianthus annuus | HanXRQChr02 | 4 | CH_han_224 | 4 | 8 | 0.0000000288169 |
| Hydrangea macrophylla | Hma1.2p1_0112F.1 | 4 | CH_hma_293 | 2 | 2 | 0.000666519 |
| Lotus japonicus | chr1 | 4 | CH_lja_147 | 3 | 3 | 0.00000219371 |
| Manihot esculenta | Chromosome18 | 4 | CH_mes_161 | 4 | 7 | 0.0000000730805 |
| Medicago truncatula | chr7 | 4 | CH_mtr_112 | 6 | 16 | 0.00000000000114171 |
| Medicago truncatula | chr4 | 4 | CH_mtr_222 | 4 | 5 | 0.00000000622506 |
| Medicago truncatula | chr1 | 4 | CH_mtr_534 | 3 | 7 | 0.000117733 |
| Nelumbo nucifera | chr3 | 4 | CH_nnu_155 | 3 | 4 | 0.0000113566 |
| Nelumbo nucifera | chr1 | 4 | CH_nnu_60 | 4 | 5 | 0.00000000512865 |
| Olea europaea | chr20 | 4 | CH_oeu_34 | 4 | 6 | 0.000000000862205 |
| Papaver somniferum | NC_039360.1 | 4 | CH_pso_177 | 5 | 16 | 0.00000000234131 |
| Papaver somniferum | NC_039365.1 | 4 | CH_pso_38 | 8 | 21 | 3.41736e-18 |
| Populus trichocarpa | Chr13 | 4 | CH_ptr_113 | 5 | 7 | 0.0000000000357482 |
| Populus trichocarpa | Chr19 | 4 | CH_ptr_266 | 3 | 3 | 0.0000066652 |
| Quercus lobata | 1 | 4 | CH_qlo_625 | 3 | 3 | 0.00000919636 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_18 | 11 | 24 | 3.47329e-28 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 4 | CH_rch_385 | 3 | 3 | 0.00000317059 |
| Rhododendron simsii | chr12 | 4 | CH_rsi_135 | 4 | 4 | 0.000000000399087 |
| Rhododendron simsii | chr04 | 4 | CH_rsi_307 | 3 | 5 | 0.0000137355 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_757 | 4 | 11 | 0.00000200216 |
| Tarenaya hassleriana | NW_010969032.1 | 4 | CH_tha_65 | 3 | 3 | 0.00000161 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |