Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Saccharum spontaneum Chr2B 1 CH_ssp_645 5 7 0.0000665704
Saccharum spontaneum Chr2B 2 CH_ssp_645 5 7 0.0000665704

Available child term results

Ontology identifier Description Number of clusters
4.1 Amino acid metabolism.biosynthesis 2
4.1.1.1.1.1 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.ornithine.N-acetylglutamate synthase 4
4.1.1.1.1.2 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.ornithine.N-acetylglutamate kinase 4
4.1.1.1.1.5 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.ornithine.N2-acetylornithine:glutamate acetyltransferase 6
4.1.1.1.1.6 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.ornithine.N2-acetylornithine deacetylase 8
4.1.1.1.2.1 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.carbamoyl phosphate synthetase heterodimer 2
4.1.1.1.2.1.1 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.carbamoyl phosphate synthetase heterodimer.large subunit 4
4.1.1.1.2.1.2 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.carbamoyl phosphate synthetase heterodimer.small subunit 2
4.1.1.1.2.2 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.ornithine carbamoyltransferase 2
4.1.1.1.2.3 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.argininosuccinate synthetase 8
4.1.1.1.2.4 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.argininosuccinate lyase 2
4.1.1.1.3.1 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.gamma-aminobutyrate (GABA).glutamate decarboxylase 28
4.1.1.1.4.1.1 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.proline.main pathway.pyrroline-5-carboxylate synthetase 14
4.1.1.1.4.1.2 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.proline.main pathway.pyrroline-5-carboxylate reductase 4
4.1.1.1.4.2.2 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.proline.alternative pathway.ornithine aminotransferase 2
4.1.1.2.1 Amino acid metabolism.biosynthesis.glutamate family.histidine.ribose-phosphate diphosphokinase 4
4.1.1.2.2 Amino acid metabolism.biosynthesis.glutamate family.histidine.ATP phosphoribosyl transferase 4
4.1.1.2.3 Amino acid metabolism.biosynthesis.glutamate family.histidine.bifunctional phosphoribosyl-ATP diphosphatase and phosphoribosyl-AMP cyclohydrolase 6
4.1.1.2.4 Amino acid metabolism.biosynthesis.glutamate family.histidine.phosphoribosyl-formimino-AICAR-phosphate isomerase 4
4.1.1.2.5 Amino acid metabolism.biosynthesis.glutamate family.histidine.imidazoleglycerol-phosphate synthase 6
4.1.1.2.7 Amino acid metabolism.biosynthesis.glutamate family.histidine.histidinol-phosphate aminotransferase 4
4.1.1.2.8 Amino acid metabolism.biosynthesis.glutamate family.histidine.histidinol-phosphate phosphatase 2
4.1.1.2.9 Amino acid metabolism.biosynthesis.glutamate family.histidine.histidinol dehydrogenase 6
4.1.2.1.1 Amino acid metabolism.biosynthesis.aspartate family.asparagine.glutamine-dependent asparagine synthetase 6
4.1.2.1.2 Amino acid metabolism.biosynthesis.aspartate family.asparagine.L-asparaginase 24
4.1.2.1.3 Amino acid metabolism.biosynthesis.aspartate family.asparagine.asparagine aminotransaminase 10
4.1.2.1.4 Amino acid metabolism.biosynthesis.aspartate family.asparagine.omega-amidase 8
4.1.2.2.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.aspartate kinase 4
4.1.2.2.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.aspartate-semialdehyde dehydrogenase 4
4.1.2.2.3.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.hydroxy-tetrahydrodihydrodipicolinate synthase 8
4.1.2.2.3.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.hydroxy-tetrahydrodihydrodipicolinate reductase 2
4.1.2.2.3.3 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.LL-diaminopimelate aminotransferase 4
4.1.2.2.3.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.diaminopimelate epimerase 12
4.1.2.2.3.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.diaminopimelate decarboxylase 10
4.1.2.2.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.bifunctional homoserine dehydrogenase and aspartate kinase 10
4.1.2.2.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.homoserine kinase 2
4.1.2.2.6.1.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.transsulfuration pathway.cystathionine gamma-synthase 40
4.1.2.2.6.1.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.transsulfuration pathway.cystathionine beta-lyase 2
4.1.2.2.6.2.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.L-homocysteine S-methyltransferase activities.methyl-tetrahydrofolate-dependent methionine synthase 18
4.1.2.2.6.3.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.S-methylmethionine cycle.homocysteine S-methyltransferase 8
4.1.2.2.6.3.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.S-methylmethionine cycle.methionine S-methyltransferase 12
4.1.2.2.6.4.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.methylthioadenosine nucleosidase (MTN) 4
4.1.2.2.6.4.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.methylthioribose kinase (MTK) 24
4.1.2.2.6.4.3 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.methylthioribose-1-phosphate isomerase (MTI) 2
4.1.2.2.6.4.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.trifunctional methylthioribulose-1-phosphate dehydratase/enolase/phosphatase (DEP) 22
4.1.2.2.6.4.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.acireductone dioxygenase (ARD) 44
4.1.2.2.7.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.threonine.threonine synthase 2
4.1.2.2.8.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.threonine reactive imine intermediate deaminase (RidA) 8
4.1.2.2.8.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.methionine gamma-lyase 2
4.1.2.2.8.3.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.acetolactate synthase complex.catalytic subunit 6
4.1.2.2.8.3.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.acetolactate synthase complex.regulatory subunit 10
4.1.2.2.8.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.dihydroxy-acid dehydratase 4
4.1.2.2.8.6 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.valine/leucine/isoleucine aminotransferase 22
4.1.3.1.1 Amino acid metabolism.biosynthesis.pyruvate family.alanine.alanine aminotransferase 20
4.1.3.2 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids 2
4.1.3.2.5.2.1 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.leucine.isopropylmalate isomerase heterodimer.large subunit 10
4.1.3.2.5.2.2 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.leucine.isopropylmalate isomerase heterodimer.small subunit 2
4.1.3.2.5.3 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.leucine.3-isopropylmalate dehydrogenase 2
4.1.4.1.1 Amino acid metabolism.biosynthesis.serine family.non-photorespiratory serine.phosphoglycerate dehydrogenase 6
4.1.4.1.2 Amino acid metabolism.biosynthesis.serine family.non-photorespiratory serine.phosphoserine aminotransferase 6
4.1.4.1.3 Amino acid metabolism.biosynthesis.serine family.non-photorespiratory serine.phosphoserine phosphatase 14
4.1.4.2.1 Amino acid metabolism.biosynthesis.serine family.cysteine.serine O-acetyltransferase (SAT) 8
4.1.4.2.2 Amino acid metabolism.biosynthesis.serine family.cysteine.O-acetylserine sulfydrylase (OASS) 6
4.1.4.3.1 Amino acid metabolism.biosynthesis.serine family.glycine.serine hydroxymethyltransferase (SHM) 4
4.1.5.1.1 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 6
4.1.5.1.2 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-dehydroquinate synthase 8
4.1.5.1.3 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-dehydroquinate dehydratase and shikimate dehydrogenase 38
4.1.5.1.4 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.shikimate kinase 8
4.1.5.1.5 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.5-enolpyruvyl-shikimate 3-phosphate (EPSP) synthase 2
4.1.5.1.6 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.chorismate synthase 8
4.1.5.2 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine 2
4.1.5.2.1 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.chorismate mutase 6
4.1.5.2.2 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.prephenate aminotransferase (PPA-AT) 2
4.1.5.2.3 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.arogenate dehydrogenase (ADH) 38
4.1.5.2.4 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.arogenate dehydratase (ADT) 12
4.1.5.3 Amino acid metabolism.biosynthesis.shikimate family.tryptophan 2
4.1.5.3.1.1 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.anthranilate synthase heterodimer.subunit alpha 4
4.1.5.3.1.2 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.anthranilate synthase heterodimer.subunit beta 4
4.1.5.3.2 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.anthranilate phosphoribosyltransferase 2
4.1.5.3.3 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.phosphoribosyanthranilate isomerase 2
4.1.5.3.4 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.indole-3-glycerol phosphate synthase 8
4.1.5.3.5.1 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.tryptophan synthase heterodimer.subunit alpha 74
4.1.5.3.5.2 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.tryptophan synthase heterodimer.subunit beta 2
4.2 Amino acid metabolism.degradation 2
4.2.1 Amino acid metabolism.degradation.arginine 4
4.2.1.1 Amino acid metabolism.degradation.arginine.arginase 8
4.2.1.2 Amino acid metabolism.degradation.arginine.urease 6
4.2.1.3 Amino acid metabolism.degradation.arginine.urease accessory protein activities 2
4.2.1.3.1 Amino acid metabolism.degradation.arginine.urease accessory protein activities.urease accessory protein (ureD) 4
4.2.1.3.2 Amino acid metabolism.degradation.arginine.urease accessory protein activities.urease accessory protein (ureF) 6
4.2.1.3.3 Amino acid metabolism.degradation.arginine.urease accessory protein activities.urease accessory protein (ureG) 6
4.2.2.1 Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).gamma-aminobutyric acid pyruvate transaminase 16
4.2.2.2.1 Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).succinate formation.NAD-dependent succinic semialdehyde dehydrogenase 2
4.2.2.3.1 Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).gamma-hydroxybutyrate formation.bifunctional gamma-hydroxybutyrate dehydrogenase and glyoxylate reductase 8
4.2.3.1 Amino acid metabolism.degradation.proline.proline dehydrogenase 6
4.2.3.2 Amino acid metabolism.degradation.proline.delta-1-pyrroline-5-carboxylate dehydrogenase 4
4.2.4.1 Amino acid metabolism.degradation.lysine.bifunctional lysine ketoglutarate reductase and saccharopine dehydrogenase 6
4.2.4.2 Amino acid metabolism.degradation.lysine.piperideine-6-carboxylate dehydrogenase 4
4.2.4.3 Amino acid metabolism.degradation.lysine.D-2-hydroxyglutarate synthase 6
4.2.4.4 Amino acid metabolism.degradation.lysine.D-2-hydroxyglutarate dehydrogenase 2
4.2.5.1 Amino acid metabolism.degradation.threonine.threonine aldolase 34
4.2.5.2 Amino acid metabolism.degradation.threonine.threonine dehydratase 8
4.2.6.2 Amino acid metabolism.degradation.cysteine.sulfur dioxygenase 2
4.2.6.3 Amino acid metabolism.degradation.cysteine.cysteine desulfhydrase 36
4.2.7.2 Amino acid metabolism.degradation.branched-chain amino acid.branched-chain alpha-keto acid dehydrogenase complex 2
4.2.7.2.1.1 Amino acid metabolism.degradation.branched-chain amino acid.branched-chain alpha-keto acid dehydrogenase complex.E1 2-oxoisovalerate dehydrogenase subcomplex.subunit alpha 2
4.2.7.2.3 Amino acid metabolism.degradation.branched-chain amino acid.branched-chain alpha-keto acid dehydrogenase complex.dihydrolipoamide dehydrogenase component E3 4
4.2.7.4 Amino acid metabolism.degradation.branched-chain amino acid.3-hydroxyisobutyryl-CoA hydrolase (CHY) 12
4.2.7.5.1.1 Amino acid metabolism.degradation.branched-chain amino acid.leucine.methylcrotonoyl-CoA carboxylase heterodimer.subunit alpha 4
4.2.7.5.2 Amino acid metabolism.degradation.branched-chain amino acid.leucine.hydroxymethylglutaryl-CoA lyase 10
4.2.7.5.3 Amino acid metabolism.degradation.branched-chain amino acid.leucine.methylglutaconyl-CoA hydratase 44
4.2.7.6.1 Amino acid metabolism.degradation.branched-chain amino acid.valine.3-hydroxyisobutyrate dehydrogenase 2
4.2.7.6.2 Amino acid metabolism.degradation.branched-chain amino acid.valine.methylmalonate-semialdehyde dehydrogenase 6
4.2.7.8.1.1 Amino acid metabolism.degradation.branched-chain amino acid.acyl-CoA dehydrogenase oxidation.ETF electron transfer flavoprotein heterodimer.subunit alpha 6
4.2.7.8.2 Amino acid metabolism.degradation.branched-chain amino acid.acyl-CoA dehydrogenase oxidation.electron transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) 6
4.2.8 Amino acid metabolism.degradation.aromatic amino acid 2
4.2.8.1 Amino acid metabolism.degradation.aromatic amino acid.aromatic-amino-acid aminotransferase 4
4.2.8.3 Amino acid metabolism.degradation.aromatic amino acid.aromatic amino acid decarboxylase 82
4.2.8.4 Amino acid metabolism.degradation.aromatic amino acid.tyrosine 2
4.2.8.4.1 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.tyrosine aminotransferase (TAT) 54
4.2.8.4.2 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.homogentisate dioxygenase 4
4.2.8.4.3 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.maleylacetoacetate isomerase 46
4.2.8.4.4 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.fumarylacetoacetate hydrolase (FAH) 4
4.3.1 Amino acid metabolism.amino acid racemization.PLP-dependent serine racemase 2
4.3.2 Amino acid metabolism.amino acid racemization.PLP-independent amino acid racemase 36

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001