Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.trifunctional methylthioribulose-1-phosphate dehydratase/enolase/phosphatase (DEP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Digitaria exilis Dexi_CM05836_chr08B 1 CH_dex_686 2 2 0.000701825
Digitaria exilis Dexi_CM05836_chr08A 1 CH_dex_687 2 2 0.000701825
Eragrostis curvula 2 1 CH_ecu_733 2 2 0.000581587
Eragrostis curvula Contig139 1 CH_ecu_734 2 2 0.000581587
Lolium perenne Lp_chr3_0 1 CH_lpe_390 2 4 0.000578533
Magnolia biondii Chr06 1 CH_mbi_654 2 4 0.000874119
Miscanthus sinensis Chr10 1 CH_msi_420 2 2 0.000193193
Populus trichocarpa Chr11 1 CH_ptr_356 2 2 0.0001734
Sequoiadendron giganteum chr7 1 CH_sgi_375 3 3 0.00000000355983
Selaginella moellendorffii scaffold_4 1 CH_smo_158 3 27 0.000762265
Saccharum spontaneum Chr6D 1 CH_ssp_1164 2 2 0.00066805
Digitaria exilis Dexi_CM05836_chr08B 2 CH_dex_686 2 2 0.000701825
Digitaria exilis Dexi_CM05836_chr08A 2 CH_dex_687 2 2 0.000701825
Eragrostis curvula 2 2 CH_ecu_733 2 2 0.000581587
Eragrostis curvula Contig139 2 CH_ecu_734 2 2 0.000581587
Lolium perenne Lp_chr3_0 2 CH_lpe_390 2 4 0.000578533
Magnolia biondii Chr06 2 CH_mbi_654 2 4 0.000874119
Miscanthus sinensis Chr10 2 CH_msi_420 2 2 0.000193193
Populus trichocarpa Chr11 2 CH_ptr_356 2 2 0.0001734
Sequoiadendron giganteum chr7 2 CH_sgi_375 3 3 0.00000000355983
Selaginella moellendorffii scaffold_4 2 CH_smo_158 3 27 0.000762265
Saccharum spontaneum Chr6D 2 CH_ssp_1164 2 2 0.00066805

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001