Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.degradation.branched-chain amino acid.leucine.methylglutaconyl-CoA hydratase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Digitaria exilis Dexi_CM05836_chr01A 1 CH_dex_442 2 2 0.000100261
Eragrostis curvula 1 1 CH_ecu_492 2 2 0.0000387725
Hordeum vulgare chr6H 1 CH_hvu_275 2 2 0.0000405836
Lolium perenne Lp_chr6_0 1 CH_lpe_219 2 2 0.0000321425
Miscanthus sinensis Chr07 1 CH_msi_373 2 2 0.0000965966
Oryza alta GWHAZTO00000002 1 CH_oal_507 2 2 0.000120908
Oryza alta GWHAZTO00000014 1 CH_oal_508 2 2 0.000120908
Oryza brachyantha 2 1 CH_obr_175 2 2 0.0000597336
Oryza sativa ssp. indica Chr2 1 CH_osaindica_219 2 2 0.0000516609
Oryza sativa Kitaake Chr2 1 CH_osak_304 2 2 0.0000562857
Oryza sativa ssp. japonica chr02 1 CH_osa_212 2 2 0.0000528123
Oropetium thomaeum Chromosome_1 1 CH_oth_143 2 3 0.0000711845
Panicum hallii Chr01 1 CH_pha_350 2 4 0.000348645
Sorghum bicolor Chr04 1 CH_sbi_278 2 2 0.0000586682
Setaria italica scaffold_1 1 CH_sit_288 2 2 0.0000580434
Setaria viridis Chr_01 1 CH_svi_333 2 3 0.000156531
Triticum aestivum Chr6B 1 CH_tae_1057 2 2 0.00011224
Triticum aestivum Chr6D 1 CH_tae_1058 2 2 0.00011224
Triticum dicoccoides 6B 1 CH_tdi_408 2 2 0.0000890551
Triticum turgidum chr6A 1 CH_ttu_559 2 2 0.000187521
Triticum turgidum chr6B 1 CH_ttu_560 2 2 0.000187521
Zea mays B73 5 1 CH_zma_155 2 2 0.0000511313
Digitaria exilis Dexi_CM05836_chr01A 2 CH_dex_442 2 2 0.000100261
Eragrostis curvula 1 2 CH_ecu_492 2 2 0.0000387725
Hordeum vulgare chr6H 2 CH_hvu_275 2 2 0.0000405836
Lolium perenne Lp_chr6_0 2 CH_lpe_219 2 2 0.0000321425
Miscanthus sinensis Chr07 2 CH_msi_373 2 2 0.0000965966
Oryza alta GWHAZTO00000002 2 CH_oal_507 2 2 0.000120908
Oryza alta GWHAZTO00000014 2 CH_oal_508 2 2 0.000120908
Oryza brachyantha 2 2 CH_obr_175 2 2 0.0000597336
Oryza sativa ssp. indica Chr2 2 CH_osaindica_219 2 2 0.0000516609
Oryza sativa Kitaake Chr2 2 CH_osak_304 2 2 0.0000562857
Oryza sativa ssp. japonica chr02 2 CH_osa_212 2 2 0.0000528123
Oropetium thomaeum Chromosome_1 2 CH_oth_143 2 3 0.0000711845
Panicum hallii Chr01 2 CH_pha_350 2 4 0.000348645
Sorghum bicolor Chr04 2 CH_sbi_278 2 2 0.0000586682
Setaria italica scaffold_1 2 CH_sit_288 2 2 0.0000580434
Setaria viridis Chr_01 2 CH_svi_333 2 3 0.000156531
Triticum aestivum Chr6B 2 CH_tae_1057 2 2 0.00011224
Triticum aestivum Chr6D 2 CH_tae_1058 2 2 0.00011224
Triticum dicoccoides 6B 2 CH_tdi_408 2 2 0.0000890551
Triticum turgidum chr6A 2 CH_ttu_559 2 2 0.000187521
Triticum turgidum chr6B 2 CH_ttu_560 2 2 0.000187521
Zea mays B73 5 2 CH_zma_155 2 2 0.0000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001