Functional clusters
Information
- Type MapMan
- Description Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.gamma-aminobutyrate (GABA).glutamate decarboxylase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG20 | 1 | CH_aco_132 | 2 | 2 | 0.000497678 |
| Arabidopsis thaliana | Chr2 | 1 | CH_ath_339 | 2 | 2 | 0.000286492 |
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 1 | CH_atr_124 | 3 | 13 | 0.00000270638 |
| Ceratophyllum demersum | 3 | 1 | CH_cde_135 | 3 | 21 | 0.000124227 |
| Cenchrus purpureus | GWHAORA00000005 | 1 | CH_cpu_459 | 4 | 41 | 0.00000638776 |
| Dioscorea dumetorum | contig631 | 1 | CH_ddu_290 | 2 | 2 | 0.000690894 |
| Glycine max | Gm08 | 1 | CH_gma_175 | 3 | 3 | 0.000000259319 |
| Magnolia biondii | Chr19 | 1 | CH_mbi_199 | 3 | 6 | 0.000000707488 |
| Oryza brachyantha | 4 | 1 | CH_obr_121 | 3 | 7 | 0.00000374516 |
| Populus trichocarpa | Chr04 | 1 | CH_ptr_533 | 2 | 2 | 0.000867002 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_537 | 3 | 11 | 0.0000845459 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_165 | 5 | 6 | 0.00000000000000532259 |
| Saccharum spontaneum | Chr5D | 1 | CH_ssp_1093 | 3 | 15 | 0.000442039 |
| Saccharum spontaneum | Chr5A | 1 | CH_ssp_712 | 3 | 9 | 0.0000816875 |
| Ananas comosus | LG20 | 2 | CH_aco_132 | 2 | 2 | 0.000497678 |
| Arabidopsis thaliana | Chr2 | 2 | CH_ath_339 | 2 | 2 | 0.000286492 |
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 2 | CH_atr_124 | 3 | 13 | 0.00000270638 |
| Ceratophyllum demersum | 3 | 2 | CH_cde_135 | 3 | 21 | 0.000124227 |
| Cenchrus purpureus | GWHAORA00000005 | 2 | CH_cpu_459 | 4 | 41 | 0.00000638776 |
| Dioscorea dumetorum | contig631 | 2 | CH_ddu_290 | 2 | 2 | 0.000690894 |
| Glycine max | Gm08 | 2 | CH_gma_175 | 3 | 3 | 0.000000259319 |
| Magnolia biondii | Chr19 | 2 | CH_mbi_199 | 3 | 6 | 0.000000707488 |
| Oryza brachyantha | 4 | 2 | CH_obr_121 | 3 | 7 | 0.00000374516 |
| Populus trichocarpa | Chr04 | 2 | CH_ptr_533 | 2 | 2 | 0.000867002 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_537 | 3 | 11 | 0.0000845459 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_165 | 5 | 6 | 0.00000000000000532259 |
| Saccharum spontaneum | Chr5D | 2 | CH_ssp_1093 | 3 | 15 | 0.000442039 |
| Saccharum spontaneum | Chr5A | 2 | CH_ssp_712 | 3 | 9 | 0.0000816875 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |