Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.pyruvate family.alanine.alanine aminotransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Lolium perenne Lp_chr1_0 1 CH_lpe_318 2 2 0.000192855
Oryza sativa Kitaake Chr10 1 CH_osak_449 2 2 0.000562857
Oryza sativa ssp. japonica chr10 1 CH_osa_401 2 3 0.000950562
Oropetium thomaeum Chromosome_1 1 CH_oth_235 2 2 0.000427107
Phyllostachys edulis hic_scaffold_4 1 CH_ped_434 2 2 0.000407456
Panicum hallii Chr09 1 CH_pha_361 2 2 0.000348665
Setaria italica scaffold_9 1 CH_sit_353 2 2 0.00017413
Solanum lycopersicum SL4.0ch03 1 CH_sly_416 2 2 0.000176082
Setaria viridis Chr_09 1 CH_svi_355 2 2 0.000156535
Zea mays B73 5 1 CH_zma_253 2 2 0.000511313
Lolium perenne Lp_chr1_0 2 CH_lpe_318 2 2 0.000192855
Oryza sativa Kitaake Chr10 2 CH_osak_449 2 2 0.000562857
Oryza sativa ssp. japonica chr10 2 CH_osa_401 2 3 0.000950562
Oropetium thomaeum Chromosome_1 2 CH_oth_235 2 2 0.000427107
Phyllostachys edulis hic_scaffold_4 2 CH_ped_434 2 2 0.000407456
Panicum hallii Chr09 2 CH_pha_361 2 2 0.000348665
Setaria italica scaffold_9 2 CH_sit_353 2 2 0.00017413
Solanum lycopersicum SL4.0ch03 2 CH_sly_416 2 2 0.000176082
Setaria viridis Chr_09 2 CH_svi_355 2 2 0.000156535
Zea mays B73 5 2 CH_zma_253 2 2 0.000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001