Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).gamma-aminobutyric acid pyruvate transaminase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cenchrus purpureus GWHAORA00000005 1 CH_cpu_660 3 43 0.000176637
Oryza alta GWHAZTO00000004 1 CH_oal_168 3 3 0.000000100505
Oryza alta GWHAZTO00000005 1 CH_oal_195 3 4 0.000000401991
Oryza brachyantha 4 1 CH_obr_282 2 3 0.000537576
Oryza sativa ssp. indica Chr4 1 CH_osaindica_339 2 2 0.000309965
Oryza sativa Kitaake Chr4 1 CH_osak_420 2 2 0.000337714
Oryza sativa ssp. japonica chr04 1 CH_osa_328 2 2 0.000316874
Saccharum spontaneum Chr6A 1 CH_ssp_1201 2 2 0.00066805
Cenchrus purpureus GWHAORA00000005 2 CH_cpu_660 3 43 0.000176637
Oryza alta GWHAZTO00000004 2 CH_oal_168 3 3 0.000000100505
Oryza alta GWHAZTO00000005 2 CH_oal_195 3 4 0.000000401991
Oryza brachyantha 4 2 CH_obr_282 2 3 0.000537576
Oryza sativa ssp. indica Chr4 2 CH_osaindica_339 2 2 0.000309965
Oryza sativa Kitaake Chr4 2 CH_osak_420 2 2 0.000337714
Oryza sativa ssp. japonica chr04 2 CH_osa_328 2 2 0.000316874
Saccharum spontaneum Chr6A 2 CH_ssp_1201 2 2 0.00066805

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001