Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.methylthioribose kinase (MTK)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00015 1 CH_atr_116 3 10 0.00000113568
Dioscorea dumetorum contig588 1 CH_ddu_156 2 2 0.0000690894
Eragrostis curvula Contig30 1 CH_ecu_478 2 2 0.0000387725
Elaeis guineensis EG5.1_Chr8 1 CH_egu_123 2 2 0.0000947329
Glycine max Gm01 1 CH_gma_416 2 2 0.000227734
Musa acuminata chr07 1 CH_mac_107 2 2 0.0000568182
Miscanthus sinensis Chr11 1 CH_msi_354 2 2 0.0000965966
Oryza sativa ssp. indica Chr4 1 CH_osaindica_210 2 2 0.0000516609
Oryza sativa Kitaake Chr4 1 CH_osak_290 2 2 0.0000562857
Oryza sativa ssp. japonica chr04 1 CH_osa_196 2 2 0.0000528123
Sorghum bicolor Chr06 1 CH_sbi_263 2 2 0.0000586682
Saccharum spontaneum Chr5A 1 CH_ssp_699 3 52 0.0000754062
Amborella trichopoda AmTr_v1.0_scaffold00015 2 CH_atr_116 3 10 0.00000113568
Dioscorea dumetorum contig588 2 CH_ddu_156 2 2 0.0000690894
Eragrostis curvula Contig30 2 CH_ecu_478 2 2 0.0000387725
Elaeis guineensis EG5.1_Chr8 2 CH_egu_123 2 2 0.0000947329
Glycine max Gm01 2 CH_gma_416 2 2 0.000227734
Musa acuminata chr07 2 CH_mac_107 2 2 0.0000568182
Miscanthus sinensis Chr11 2 CH_msi_354 2 2 0.0000965966
Oryza sativa ssp. indica Chr4 2 CH_osaindica_210 2 2 0.0000516609
Oryza sativa Kitaake Chr4 2 CH_osak_290 2 2 0.0000562857
Oryza sativa ssp. japonica chr04 2 CH_osa_196 2 2 0.0000528123
Sorghum bicolor Chr06 2 CH_sbi_263 2 2 0.0000586682
Saccharum spontaneum Chr5A 2 CH_ssp_699 3 52 0.0000754062

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001