Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.degradation.aromatic amino acid.tyrosine.maleylacetoacetate isomerase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr2 1 CH_ath_222 2 2 0.0000286492
Brachypodium distachyon Bd4 1 CH_bdi_70 3 3 0.000000022818
Calamus simplicifolius scaffold116 1 CH_calsi_239 2 2 0.000201396
Cenchrus purpureus GWHAORA00000008 1 CH_cpu_305 3 3 0.000000172022
Cenchrus purpureus GWHAORA00000001 1 CH_cpu_350 3 4 0.000000688022
Dioscorea dumetorum contig185 1 CH_ddu_113 3 5 0.0000025054
Dioscorea dumetorum contig705 1 CH_ddu_35 4 4 0.0000000000346313
Glycine max Gm17 1 CH_gma_380 2 2 0.000113867
Hordeum vulgare chr5H 1 CH_hvu_359 2 2 0.000243502
Lolium perenne Lp_chr5_0 1 CH_lpe_84 3 3 0.00000000619892
Magnolia biondii Chr06 1 CH_mbi_166 3 4 0.000000141515
Oryza alta GWHAZTO00000012 1 CH_oal_684 2 2 0.000423178
Oryza brachyantha 12 1 CH_obr_256 2 2 0.000358402
Oryza sativa Kitaake Chr12 1 CH_osak_408 2 2 0.000337714
Oryza sativa ssp. japonica chr12 1 CH_osa_312 2 2 0.000316874
Oropetium thomaeum Chromosome_2 1 CH_oth_69 3 4 0.00000012161
Panicum hallii Chr03 1 CH_pha_363 2 2 0.000348665
Sorghum bicolor Chr08 1 CH_sbi_378 2 2 0.000352009
Secale cereale GWHASIY00000005 1 CH_sce_894 2 2 0.000682936
Sequoiadendron giganteum chr3 1 CH_sgi_530 3 5 0.000000142381
Setaria italica scaffold_3 1 CH_sit_152 3 4 0.000000202133
Saccharum spontaneum Chr4B 1 CH_ssp_261 3 3 0.000000244211
Setaria viridis Chr_03 1 CH_svi_152 3 5 0.000000163345
Arabidopsis thaliana Chr2 2 CH_ath_222 2 2 0.0000286492
Brachypodium distachyon Bd4 2 CH_bdi_70 3 3 0.000000022818
Calamus simplicifolius scaffold116 2 CH_calsi_239 2 2 0.000201396
Cenchrus purpureus GWHAORA00000008 2 CH_cpu_305 3 3 0.000000172022
Cenchrus purpureus GWHAORA00000001 2 CH_cpu_350 3 4 0.000000688022
Dioscorea dumetorum contig185 2 CH_ddu_113 3 5 0.0000025054
Dioscorea dumetorum contig705 2 CH_ddu_35 4 4 0.0000000000346313
Glycine max Gm17 2 CH_gma_380 2 2 0.000113867
Hordeum vulgare chr5H 2 CH_hvu_359 2 2 0.000243502
Lolium perenne Lp_chr5_0 2 CH_lpe_84 3 3 0.00000000619892
Magnolia biondii Chr06 2 CH_mbi_166 3 4 0.000000141515
Oryza alta GWHAZTO00000012 2 CH_oal_684 2 2 0.000423178
Oryza brachyantha 12 2 CH_obr_256 2 2 0.000358402
Oryza sativa Kitaake Chr12 2 CH_osak_408 2 2 0.000337714
Oryza sativa ssp. japonica chr12 2 CH_osa_312 2 2 0.000316874
Oropetium thomaeum Chromosome_2 2 CH_oth_69 3 4 0.00000012161
Panicum hallii Chr03 2 CH_pha_363 2 2 0.000348665
Sorghum bicolor Chr08 2 CH_sbi_378 2 2 0.000352009
Secale cereale GWHASIY00000005 2 CH_sce_894 2 2 0.000682936
Sequoiadendron giganteum chr3 2 CH_sgi_530 3 5 0.000000142381
Setaria italica scaffold_3 2 CH_sit_152 3 4 0.000000202133
Saccharum spontaneum Chr4B 2 CH_ssp_261 3 3 0.000000244211
Setaria viridis Chr_03 2 CH_svi_152 3 5 0.000000163345

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001