Functional clusters
Information
- Type MapMan
- Description Amino acid metabolism.degradation.aromatic amino acid.tyrosine.maleylacetoacetate isomerase
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis thaliana | Chr2 | 1 | CH_ath_222 | 2 | 2 | 0.0000286492 |
Brachypodium distachyon | Bd4 | 1 | CH_bdi_70 | 3 | 3 | 0.000000022818 |
Calamus simplicifolius | scaffold116 | 1 | CH_calsi_239 | 2 | 2 | 0.000201396 |
Cenchrus purpureus | GWHAORA00000008 | 1 | CH_cpu_305 | 3 | 3 | 0.000000172022 |
Cenchrus purpureus | GWHAORA00000001 | 1 | CH_cpu_350 | 3 | 4 | 0.000000688022 |
Dioscorea dumetorum | contig185 | 1 | CH_ddu_113 | 3 | 5 | 0.0000025054 |
Dioscorea dumetorum | contig705 | 1 | CH_ddu_35 | 4 | 4 | 0.0000000000346313 |
Glycine max | Gm17 | 1 | CH_gma_380 | 2 | 2 | 0.000113867 |
Hordeum vulgare | chr5H | 1 | CH_hvu_359 | 2 | 2 | 0.000243502 |
Lolium perenne | Lp_chr5_0 | 1 | CH_lpe_84 | 3 | 3 | 0.00000000619892 |
Magnolia biondii | Chr06 | 1 | CH_mbi_166 | 3 | 4 | 0.000000141515 |
Oryza alta | GWHAZTO00000012 | 1 | CH_oal_684 | 2 | 2 | 0.000423178 |
Oryza brachyantha | 12 | 1 | CH_obr_256 | 2 | 2 | 0.000358402 |
Oryza sativa Kitaake | Chr12 | 1 | CH_osak_408 | 2 | 2 | 0.000337714 |
Oryza sativa ssp. japonica | chr12 | 1 | CH_osa_312 | 2 | 2 | 0.000316874 |
Oropetium thomaeum | Chromosome_2 | 1 | CH_oth_69 | 3 | 4 | 0.00000012161 |
Panicum hallii | Chr03 | 1 | CH_pha_363 | 2 | 2 | 0.000348665 |
Sorghum bicolor | Chr08 | 1 | CH_sbi_378 | 2 | 2 | 0.000352009 |
Secale cereale | GWHASIY00000005 | 1 | CH_sce_894 | 2 | 2 | 0.000682936 |
Sequoiadendron giganteum | chr3 | 1 | CH_sgi_530 | 3 | 5 | 0.000000142381 |
Setaria italica | scaffold_3 | 1 | CH_sit_152 | 3 | 4 | 0.000000202133 |
Saccharum spontaneum | Chr4B | 1 | CH_ssp_261 | 3 | 3 | 0.000000244211 |
Setaria viridis | Chr_03 | 1 | CH_svi_152 | 3 | 5 | 0.000000163345 |
Arabidopsis thaliana | Chr2 | 2 | CH_ath_222 | 2 | 2 | 0.0000286492 |
Brachypodium distachyon | Bd4 | 2 | CH_bdi_70 | 3 | 3 | 0.000000022818 |
Calamus simplicifolius | scaffold116 | 2 | CH_calsi_239 | 2 | 2 | 0.000201396 |
Cenchrus purpureus | GWHAORA00000008 | 2 | CH_cpu_305 | 3 | 3 | 0.000000172022 |
Cenchrus purpureus | GWHAORA00000001 | 2 | CH_cpu_350 | 3 | 4 | 0.000000688022 |
Dioscorea dumetorum | contig185 | 2 | CH_ddu_113 | 3 | 5 | 0.0000025054 |
Dioscorea dumetorum | contig705 | 2 | CH_ddu_35 | 4 | 4 | 0.0000000000346313 |
Glycine max | Gm17 | 2 | CH_gma_380 | 2 | 2 | 0.000113867 |
Hordeum vulgare | chr5H | 2 | CH_hvu_359 | 2 | 2 | 0.000243502 |
Lolium perenne | Lp_chr5_0 | 2 | CH_lpe_84 | 3 | 3 | 0.00000000619892 |
Magnolia biondii | Chr06 | 2 | CH_mbi_166 | 3 | 4 | 0.000000141515 |
Oryza alta | GWHAZTO00000012 | 2 | CH_oal_684 | 2 | 2 | 0.000423178 |
Oryza brachyantha | 12 | 2 | CH_obr_256 | 2 | 2 | 0.000358402 |
Oryza sativa Kitaake | Chr12 | 2 | CH_osak_408 | 2 | 2 | 0.000337714 |
Oryza sativa ssp. japonica | chr12 | 2 | CH_osa_312 | 2 | 2 | 0.000316874 |
Oropetium thomaeum | Chromosome_2 | 2 | CH_oth_69 | 3 | 4 | 0.00000012161 |
Panicum hallii | Chr03 | 2 | CH_pha_363 | 2 | 2 | 0.000348665 |
Sorghum bicolor | Chr08 | 2 | CH_sbi_378 | 2 | 2 | 0.000352009 |
Secale cereale | GWHASIY00000005 | 2 | CH_sce_894 | 2 | 2 | 0.000682936 |
Sequoiadendron giganteum | chr3 | 2 | CH_sgi_530 | 3 | 5 | 0.000000142381 |
Setaria italica | scaffold_3 | 2 | CH_sit_152 | 3 | 4 | 0.000000202133 |
Saccharum spontaneum | Chr4B | 2 | CH_ssp_261 | 3 | 3 | 0.000000244211 |
Setaria viridis | Chr_03 | 2 | CH_svi_152 | 3 | 5 | 0.000000163345 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |