Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.arogenate dehydrogenase (ADH)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG13 1 CH_aco_138 2 2 0.000497678
Aegilops tauschii 7D 1 CH_ata_286 2 3 0.000443157
Brachypodium distachyon Bd1 1 CH_bdi_305 2 3 0.000554979
Cenchrus purpureus GWHAORA00000012 1 CH_cpu_826 2 3 0.000556429
Eragrostis curvula 3 1 CH_ecu_75 5 9 0.0000000000000128134
Lolium perenne Lp_chr7_0.1 1 CH_lpe_340 2 3 0.000289274
Musa acuminata chr06 1 CH_mac_178 2 2 0.000340909
Oryza alta GWHAZTO00000006 1 CH_oal_682 2 2 0.000423178
Oryza brachyantha 6 1 CH_obr_278 2 3 0.000537576
Oryza sativa ssp. indica Chr6 1 CH_osaindica_406 2 4 0.000929816
Oryza sativa ssp. japonica chr06 1 CH_osa_349 2 3 0.000475289
Panicum hallii Chr04 1 CH_pha_383 2 3 0.000522972
Sorghum bicolor Chr10 1 CH_sbi_412 2 3 0.000527988
Secale cereale GWHASIY00000007 1 CH_sce_106 4 8 0.0000000000990863
Setaria italica scaffold_4 1 CH_sit_355 2 2 0.00017413
Saccharum spontaneum Chr8B 1 CH_ssp_1322 2 2 0.000858922
Setaria viridis Chr_04 1 CH_svi_428 2 3 0.000469586
Triticum turgidum chr7A 1 CH_ttu_613 2 2 0.000312534
Zoysia japonica ssp. nagirizaki Zjn_sc00068.1 1 CH_zjn_226 2 3 0.000665886
Ananas comosus LG13 2 CH_aco_138 2 2 0.000497678
Aegilops tauschii 7D 2 CH_ata_286 2 3 0.000443157
Brachypodium distachyon Bd1 2 CH_bdi_305 2 3 0.000554979
Cenchrus purpureus GWHAORA00000012 2 CH_cpu_826 2 3 0.000556429
Eragrostis curvula 3 2 CH_ecu_75 5 9 0.0000000000000128134
Lolium perenne Lp_chr7_0.1 2 CH_lpe_340 2 3 0.000289274
Musa acuminata chr06 2 CH_mac_178 2 2 0.000340909
Oryza alta GWHAZTO00000006 2 CH_oal_682 2 2 0.000423178
Oryza brachyantha 6 2 CH_obr_278 2 3 0.000537576
Oryza sativa ssp. indica Chr6 2 CH_osaindica_406 2 4 0.000929816
Oryza sativa ssp. japonica chr06 2 CH_osa_349 2 3 0.000475289
Panicum hallii Chr04 2 CH_pha_383 2 3 0.000522972
Sorghum bicolor Chr10 2 CH_sbi_412 2 3 0.000527988
Secale cereale GWHASIY00000007 2 CH_sce_106 4 8 0.0000000000990863
Setaria italica scaffold_4 2 CH_sit_355 2 2 0.00017413
Saccharum spontaneum Chr8B 2 CH_ssp_1322 2 2 0.000858922
Setaria viridis Chr_04 2 CH_svi_428 2 3 0.000469586
Triticum turgidum chr7A 2 CH_ttu_613 2 2 0.000312534
Zoysia japonica ssp. nagirizaki Zjn_sc00068.1 2 CH_zjn_226 2 3 0.000665886

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001