Functional clusters
Information
- Type MapMan
- Description Amino acid metabolism.degradation.aromatic amino acid.aromatic amino acid decarboxylase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 1 | CH_atr_220 | 3 | 12 | 0.000116431 |
| Brachypodium distachyon | Bd3 | 1 | CH_bdi_30 | 5 | 9 | 0.00000000000631041 |
| Ceratophyllum demersum | 11 | 1 | CH_cde_56 | 3 | 4 | 0.00000449027 |
| Ceratophyllum demersum | 9 | 1 | CH_cde_57 | 3 | 4 | 0.00000449027 |
| Cenchrus purpureus | GWHAORA00000003 | 1 | CH_cpu_113 | 5 | 5 | 0.00000000000939012 |
| Cenchrus purpureus | GWHAORA00000008 | 1 | CH_cpu_239 | 4 | 4 | 0.0000000144637 |
| Cenchrus purpureus | GWHAORA00000001 | 1 | CH_cpu_262 | 5 | 16 | 0.0000000407715 |
| Cenchrus purpureus | GWHAORA00000001 | 1 | CH_cpu_514 | 3 | 3 | 0.0000217608 |
| Cenchrus purpureus | GWHAORA00000011 | 1 | CH_cpu_863 | 3 | 7 | 0.000760064 |
| Dioscorea dumetorum | contig89 | 1 | CH_ddu_95 | 3 | 4 | 0.000000572757 |
| Eragrostis curvula | Contig4 | 1 | CH_ecu_89 | 6 | 14 | 0.000000000000109736 |
| Elaeis guineensis | EG5.1_Chr1 | 1 | CH_egu_76 | 3 | 5 | 0.00000269159 |
| Hordeum vulgare | chr7H | 1 | CH_hvu_187 | 4 | 15 | 0.00000132217 |
| Hordeum vulgare | chr3H | 1 | CH_hvu_290 | 3 | 6 | 0.0000562824 |
| Hordeum vulgare | chr2H | 1 | CH_hvu_291 | 3 | 6 | 0.0000562824 |
| Lolium perenne | Lp_chr7_0.1 | 1 | CH_lpe_44 | 5 | 13 | 0.0000000000309052 |
| Musa acuminata | chr11 | 1 | CH_mac_205 | 2 | 2 | 0.000568182 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_75 | 4 | 4 | 0.0000000000240575 |
| Miscanthus sinensis | Chr10 | 1 | CH_msi_572 | 3 | 18 | 0.000576012 |
| Oryza brachyantha | 8 | 1 | CH_obr_296 | 2 | 2 | 0.000597336 |
| Oropetium thomaeum | Chromosome_9 | 1 | CH_oth_75 | 3 | 3 | 0.000000152022 |
| Phyllostachys edulis | hic_scaffold_22 | 1 | CH_ped_254 | 3 | 5 | 0.0000203112 |
| Phyllostachys edulis | hic_scaffold_18 | 1 | CH_ped_41 | 5 | 5 | 0.000000000000177141 |
| Panicum hallii | Chr06 | 1 | CH_pha_198 | 3 | 4 | 0.00000579344 |
| Physcomitrium patens | Chr04 | 1 | CH_ppa_24 | 3 | 5 | 0.0000000563133 |
| Populus trichocarpa | Chr13 | 1 | CH_ptr_513 | 2 | 2 | 0.000578001 |
| Sorghum bicolor | Chr07 | 1 | CH_sbi_217 | 3 | 5 | 0.0000043356 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_192 | 4 | 7 | 0.000000038378 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_526 | 3 | 3 | 0.000000124594 |
| Setaria italica | scaffold_6 | 1 | CH_sit_95 | 4 | 5 | 0.00000000400309 |
| Spirodela polyrhiza | pseudo0 | 1 | CH_spo_75 | 3 | 3 | 0.000000311654 |
| Saccharum spontaneum | Chr6D | 1 | CH_ssp_226 | 4 | 10 | 0.000000108105 |
| Saccharum spontaneum | Chr6C | 1 | CH_ssp_79 | 5 | 10 | 0.0000000000325072 |
| Setaria viridis | Chr_06 | 1 | CH_svi_135 | 4 | 5 | 0.0000000670147 |
| Setaria viridis | Chr_08 | 1 | CH_svi_3 | 16 | 33 | 1.29037e-38 |
| Triticum aestivum | Chr2A | 1 | CH_tae_995 | 3 | 4 | 0.00005818 |
| Triticum turgidum | chr7A | 1 | CH_ttu_19 | 8 | 10 | 7.49283e-21 |
| Triticum turgidum | chr7A | 1 | CH_ttu_454 | 3 | 4 | 0.0000350574 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00071.1 | 1 | CH_zjn_11 | 4 | 4 | 0.0000000000751949 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00063.1 | 1 | CH_zjn_73 | 3 | 6 | 0.00000902936 |
| Zea mays B104 | scaffold1.282 | 1 | CH_zma-b104_45 | 2 | 3 | 0.000914216 |
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 2 | CH_atr_220 | 3 | 12 | 0.000116431 |
| Brachypodium distachyon | Bd3 | 2 | CH_bdi_30 | 5 | 9 | 0.00000000000631041 |
| Ceratophyllum demersum | 11 | 2 | CH_cde_56 | 3 | 4 | 0.00000449027 |
| Ceratophyllum demersum | 9 | 2 | CH_cde_57 | 3 | 4 | 0.00000449027 |
| Cenchrus purpureus | GWHAORA00000003 | 2 | CH_cpu_113 | 5 | 5 | 0.00000000000939012 |
| Cenchrus purpureus | GWHAORA00000008 | 2 | CH_cpu_239 | 4 | 4 | 0.0000000144637 |
| Cenchrus purpureus | GWHAORA00000001 | 2 | CH_cpu_262 | 5 | 16 | 0.0000000407715 |
| Cenchrus purpureus | GWHAORA00000001 | 2 | CH_cpu_514 | 3 | 3 | 0.0000217608 |
| Cenchrus purpureus | GWHAORA00000011 | 2 | CH_cpu_863 | 3 | 7 | 0.000760064 |
| Dioscorea dumetorum | contig89 | 2 | CH_ddu_95 | 3 | 4 | 0.000000572757 |
| Eragrostis curvula | Contig4 | 2 | CH_ecu_89 | 6 | 14 | 0.000000000000109736 |
| Elaeis guineensis | EG5.1_Chr1 | 2 | CH_egu_76 | 3 | 5 | 0.00000269159 |
| Hordeum vulgare | chr7H | 2 | CH_hvu_187 | 4 | 15 | 0.00000132217 |
| Hordeum vulgare | chr3H | 2 | CH_hvu_290 | 3 | 6 | 0.0000562824 |
| Hordeum vulgare | chr2H | 2 | CH_hvu_291 | 3 | 6 | 0.0000562824 |
| Lolium perenne | Lp_chr7_0.1 | 2 | CH_lpe_44 | 5 | 13 | 0.0000000000309052 |
| Musa acuminata | chr11 | 2 | CH_mac_205 | 2 | 2 | 0.000568182 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_75 | 4 | 4 | 0.0000000000240575 |
| Miscanthus sinensis | Chr10 | 2 | CH_msi_572 | 3 | 18 | 0.000576012 |
| Oryza brachyantha | 8 | 2 | CH_obr_296 | 2 | 2 | 0.000597336 |
| Oropetium thomaeum | Chromosome_9 | 2 | CH_oth_75 | 3 | 3 | 0.000000152022 |
| Phyllostachys edulis | hic_scaffold_22 | 2 | CH_ped_254 | 3 | 5 | 0.0000203112 |
| Phyllostachys edulis | hic_scaffold_18 | 2 | CH_ped_41 | 5 | 5 | 0.000000000000177141 |
| Panicum hallii | Chr06 | 2 | CH_pha_198 | 3 | 4 | 0.00000579344 |
| Physcomitrium patens | Chr04 | 2 | CH_ppa_24 | 3 | 5 | 0.0000000563133 |
| Populus trichocarpa | Chr13 | 2 | CH_ptr_513 | 2 | 2 | 0.000578001 |
| Sorghum bicolor | Chr07 | 2 | CH_sbi_217 | 3 | 5 | 0.0000043356 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_192 | 4 | 7 | 0.000000038378 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_526 | 3 | 3 | 0.000000124594 |
| Setaria italica | scaffold_6 | 2 | CH_sit_95 | 4 | 5 | 0.00000000400309 |
| Spirodela polyrhiza | pseudo0 | 2 | CH_spo_75 | 3 | 3 | 0.000000311654 |
| Saccharum spontaneum | Chr6D | 2 | CH_ssp_226 | 4 | 10 | 0.000000108105 |
| Saccharum spontaneum | Chr6C | 2 | CH_ssp_79 | 5 | 10 | 0.0000000000325072 |
| Setaria viridis | Chr_06 | 2 | CH_svi_135 | 4 | 5 | 0.0000000670147 |
| Setaria viridis | Chr_08 | 2 | CH_svi_3 | 16 | 33 | 1.29037e-38 |
| Triticum aestivum | Chr2A | 2 | CH_tae_995 | 3 | 4 | 0.00005818 |
| Triticum turgidum | chr7A | 2 | CH_ttu_19 | 8 | 10 | 7.49283e-21 |
| Triticum turgidum | chr7A | 2 | CH_ttu_454 | 3 | 4 | 0.0000350574 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00071.1 | 2 | CH_zjn_11 | 4 | 4 | 0.0000000000751949 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00063.1 | 2 | CH_zjn_73 | 3 | 6 | 0.00000902936 |
| Zea mays B104 | scaffold1.282 | 2 | CH_zma-b104_45 | 2 | 3 | 0.000914216 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |