Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.L-homocysteine S-methyltransferase activities.methyl-tetrahydrofolate-dependent methionine synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr4 1 CH_asa_197 3 3 0.000000126158
Dioscorea dumetorum contig553 1 CH_ddu_249 2 2 0.000414536
Dioscorea dumetorum contig89 1 CH_ddu_250 2 2 0.000414536
Magnolia biondii Chr11 1 CH_mbi_670 2 3 0.00087414
Oryza alta GWHAZTO00000012 1 CH_oal_472 2 2 0.000120908
Oryza sativa ssp. indica Chr12 1 CH_osaindica_209 2 2 0.0000516609
Oryza sativa Kitaake Chr12 1 CH_osak_289 2 2 0.0000562857
Oryza sativa ssp. japonica chr12 1 CH_osa_249 2 4 0.000158433
Sequoiadendron giganteum chr2 1 CH_sgi_448 3 3 0.0000000142393
Allium sativum chr4 2 CH_asa_197 3 3 0.000000126158
Dioscorea dumetorum contig553 2 CH_ddu_249 2 2 0.000414536
Dioscorea dumetorum contig89 2 CH_ddu_250 2 2 0.000414536
Magnolia biondii Chr11 2 CH_mbi_670 2 3 0.00087414
Oryza alta GWHAZTO00000012 2 CH_oal_472 2 2 0.000120908
Oryza sativa ssp. indica Chr12 2 CH_osaindica_209 2 2 0.0000516609
Oryza sativa Kitaake Chr12 2 CH_osak_289 2 2 0.0000562857
Oryza sativa ssp. japonica chr12 2 CH_osa_249 2 4 0.000158433
Sequoiadendron giganteum chr2 2 CH_sgi_448 3 3 0.0000000142393

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001