Functional clusters
Information
- Type MapMan
- Description Amino acid metabolism.biosynthesis.shikimate family.tryptophan.tryptophan synthase heterodimer.subunit alpha
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_03 | 1 | CH_aof_14 | 5 | 70 | 0.0000000618466 |
| Aegilops tauschii | 5D | 1 | CH_ata_108 | 3 | 5 | 0.000000363676 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 1 | CH_atr_168 | 2 | 2 | 0.0000794407 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_75 | 3 | 3 | 0.0000000570449 |
| Cenchrus purpureus | GWHAORA00000011 | 1 | CH_cpu_184 | 4 | 4 | 0.000000000941822 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_2 | 17 | 20 | 1.49208e-54 |
| Digitaria exilis | Dexi_CM05836_chr09B | 1 | CH_dex_102 | 4 | 8 | 0.000000000987403 |
| Elaeis guineensis | EG5.1_Chr1 | 1 | CH_egu_213 | 2 | 2 | 0.000284199 |
| Hordeum vulgare | chr5H | 1 | CH_hvu_145 | 3 | 4 | 0.0000000988187 |
| Lolium perenne | Lp_chr4_0 | 1 | CH_lpe_43 | 4 | 6 | 0.0000000000224143 |
| Miscanthus sinensis | Chr01 | 1 | CH_msi_537 | 2 | 2 | 0.000482983 |
| Oryza alta | GWHAZTO00000015 | 1 | CH_oal_159 | 3 | 3 | 0.0000000730945 |
| Oryza alta | GWHAZTO00000003 | 1 | CH_oal_28 | 5 | 10 | 0.0000000000000785219 |
| Oryza brachyantha | 3 | 1 | CH_obr_28 | 4 | 4 | 0.00000000000319732 |
| Oryza sativa ssp. indica | Chr3 | 1 | CH_osaindica_57 | 4 | 8 | 0.000000000144753 |
| Oryza sativa Kitaake | Chr3 | 1 | CH_osak_75 | 4 | 5 | 0.0000000000133743 |
| Oryza sativa ssp. japonica | chr03 | 1 | CH_osa_97 | 3 | 4 | 0.0000000669379 |
| Oropetium thomaeum | Chromosome_4 | 1 | CH_oth_195 | 2 | 2 | 0.000213554 |
| Phyllostachys edulis | hic_scaffold_15 | 1 | CH_ped_65 | 4 | 5 | 0.0000000000710268 |
| Panicum hallii | Chr09 | 1 | CH_pha_45 | 4 | 4 | 0.00000000000294374 |
| Sorghum bicolor | Chr01 | 1 | CH_sbi_114 | 3 | 3 | 0.0000000206524 |
| Secale cereale | GWHASIY00000005 | 1 | CH_sce_28 | 7 | 11 | 2.64679e-18 |
| Setaria italica | scaffold_9 | 1 | CH_sit_72 | 4 | 5 | 0.000000000043998 |
| Selaginella moellendorffii | scaffold_19 | 1 | CH_smo_91 | 2 | 2 | 0.0000933707 |
| Spirodela polyrhiza | pseudo0 | 1 | CH_spo_174 | 2 | 2 | 0.000305764 |
| Saccharum spontaneum | Chr1D | 1 | CH_ssp_231 | 4 | 29 | 0.000000121757 |
| Setaria viridis | Chr_09 | 1 | CH_svi_64 | 4 | 5 | 0.0000000000319631 |
| Triticum aestivum | Chr5A | 1 | CH_tae_195 | 5 | 7 | 0.000000000000819558 |
| Triticum aestivum | Chr5D | 1 | CH_tae_196 | 5 | 7 | 0.000000000000819558 |
| Triticum aestivum | Chr5B | 1 | CH_tae_224 | 5 | 9 | 0.0000000000049158 |
| Triticum dicoccoides | 5B | 1 | CH_tdi_161 | 4 | 13 | 0.0000000400765 |
| Triticum dicoccoides | 5A | 1 | CH_tdi_299 | 3 | 5 | 0.00000755796 |
| Triticum turgidum | chr5A | 1 | CH_ttu_33 | 6 | 8 | 2.32453e-16 |
| Triticum turgidum | chr5B | 1 | CH_ttu_86 | 5 | 9 | 0.00000000000557589 |
| Vanilla planifolia | CM028156.1 | 1 | CH_vpl_345 | 2 | 3 | 0.000664951 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00013.1 | 1 | CH_zjn_212 | 2 | 2 | 0.000554929 |
| Zea mays B73 | 1 | 1 | CH_zma_37 | 4 | 7 | 0.000000000210517 |
| Asparagus officinalis | AsparagusV1_03 | 2 | CH_aof_14 | 5 | 70 | 0.0000000618466 |
| Aegilops tauschii | 5D | 2 | CH_ata_108 | 3 | 5 | 0.000000363676 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 2 | CH_atr_168 | 2 | 2 | 0.0000794407 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_75 | 3 | 3 | 0.0000000570449 |
| Cenchrus purpureus | GWHAORA00000011 | 2 | CH_cpu_184 | 4 | 4 | 0.000000000941822 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_2 | 17 | 20 | 1.49208e-54 |
| Digitaria exilis | Dexi_CM05836_chr09B | 2 | CH_dex_102 | 4 | 8 | 0.000000000987403 |
| Elaeis guineensis | EG5.1_Chr1 | 2 | CH_egu_213 | 2 | 2 | 0.000284199 |
| Hordeum vulgare | chr5H | 2 | CH_hvu_145 | 3 | 4 | 0.0000000988187 |
| Lolium perenne | Lp_chr4_0 | 2 | CH_lpe_43 | 4 | 6 | 0.0000000000224143 |
| Miscanthus sinensis | Chr01 | 2 | CH_msi_537 | 2 | 2 | 0.000482983 |
| Oryza alta | GWHAZTO00000015 | 2 | CH_oal_159 | 3 | 3 | 0.0000000730945 |
| Oryza alta | GWHAZTO00000003 | 2 | CH_oal_28 | 5 | 10 | 0.0000000000000785219 |
| Oryza brachyantha | 3 | 2 | CH_obr_28 | 4 | 4 | 0.00000000000319732 |
| Oryza sativa ssp. indica | Chr3 | 2 | CH_osaindica_57 | 4 | 8 | 0.000000000144753 |
| Oryza sativa Kitaake | Chr3 | 2 | CH_osak_75 | 4 | 5 | 0.0000000000133743 |
| Oryza sativa ssp. japonica | chr03 | 2 | CH_osa_97 | 3 | 4 | 0.0000000669379 |
| Oropetium thomaeum | Chromosome_4 | 2 | CH_oth_195 | 2 | 2 | 0.000213554 |
| Phyllostachys edulis | hic_scaffold_15 | 2 | CH_ped_65 | 4 | 5 | 0.0000000000710268 |
| Panicum hallii | Chr09 | 2 | CH_pha_45 | 4 | 4 | 0.00000000000294374 |
| Sorghum bicolor | Chr01 | 2 | CH_sbi_114 | 3 | 3 | 0.0000000206524 |
| Secale cereale | GWHASIY00000005 | 2 | CH_sce_28 | 7 | 11 | 2.64679e-18 |
| Setaria italica | scaffold_9 | 2 | CH_sit_72 | 4 | 5 | 0.000000000043998 |
| Selaginella moellendorffii | scaffold_19 | 2 | CH_smo_91 | 2 | 2 | 0.0000933707 |
| Spirodela polyrhiza | pseudo0 | 2 | CH_spo_174 | 2 | 2 | 0.000305764 |
| Saccharum spontaneum | Chr1D | 2 | CH_ssp_231 | 4 | 29 | 0.000000121757 |
| Setaria viridis | Chr_09 | 2 | CH_svi_64 | 4 | 5 | 0.0000000000319631 |
| Triticum aestivum | Chr5A | 2 | CH_tae_195 | 5 | 7 | 0.000000000000819558 |
| Triticum aestivum | Chr5D | 2 | CH_tae_196 | 5 | 7 | 0.000000000000819558 |
| Triticum aestivum | Chr5B | 2 | CH_tae_224 | 5 | 9 | 0.0000000000049158 |
| Triticum dicoccoides | 5B | 2 | CH_tdi_161 | 4 | 13 | 0.0000000400765 |
| Triticum dicoccoides | 5A | 2 | CH_tdi_299 | 3 | 5 | 0.00000755796 |
| Triticum turgidum | chr5A | 2 | CH_ttu_33 | 6 | 8 | 2.32453e-16 |
| Triticum turgidum | chr5B | 2 | CH_ttu_86 | 5 | 9 | 0.00000000000557589 |
| Vanilla planifolia | CM028156.1 | 2 | CH_vpl_345 | 2 | 3 | 0.000664951 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00013.1 | 2 | CH_zjn_212 | 2 | 2 | 0.000554929 |
| Zea mays B73 | 1 | 2 | CH_zma_37 | 4 | 7 | 0.000000000210517 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |