Functional clusters
Information
- Type MapMan
- Description Amino acid metabolism.degradation.threonine.threonine aldolase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr7_1 | 1 | CH_asa_545 | 2 | 2 | 0.000116261 |
| Cenchrus purpureus | GWHAORA00000005 | 1 | CH_cpu_138 | 5 | 39 | 0.0000000000827173 |
| Cenchrus purpureus | GWHAORA00000014 | 1 | CH_cpu_845 | 2 | 2 | 0.00064919 |
| Digitaria exilis | Dexi_CM05836_chr07B | 1 | CH_dex_151 | 3 | 3 | 0.000000016754 |
| Eragrostis curvula | Contig30 | 1 | CH_ecu_568 | 2 | 3 | 0.000116315 |
| Miscanthus sinensis | Chr11 | 1 | CH_msi_131 | 3 | 3 | 0.0000000311035 |
| Miscanthus sinensis | Chr12 | 1 | CH_msi_173 | 3 | 5 | 0.000000311002 |
| Panicum hallii | Chr07 | 1 | CH_pha_99 | 3 | 4 | 0.0000000202612 |
| Sorghum bicolor | Chr06 | 1 | CH_sbi_113 | 3 | 4 | 0.0000000206518 |
| Setaria italica | scaffold_7 | 1 | CH_sit_134 | 3 | 5 | 0.000000050534 |
| Saccharum spontaneum | Chr5D | 1 | CH_ssp_357 | 3 | 5 | 0.00000102451 |
| Saccharum spontaneum | Chr5C | 1 | CH_ssp_469 | 3 | 8 | 0.00000573596 |
| Setaria viridis | Chr_07 | 1 | CH_svi_126 | 3 | 5 | 0.0000000408378 |
| Triticum aestivum | Chr5A | 1 | CH_tae_1245 | 3 | 24 | 0.000303345 |
| Triticum turgidum | chr5A | 1 | CH_ttu_485 | 3 | 16 | 0.0000688454 |
| Zea mays B73 | 2 | 1 | CH_zma_260 | 2 | 2 | 0.000511313 |
| Zostera marina | Chr01 | 1 | CH_zosmarina_177 | 2 | 2 | 0.000289673 |
| Allium sativum | chr7_1 | 2 | CH_asa_545 | 2 | 2 | 0.000116261 |
| Cenchrus purpureus | GWHAORA00000005 | 2 | CH_cpu_138 | 5 | 39 | 0.0000000000827173 |
| Cenchrus purpureus | GWHAORA00000014 | 2 | CH_cpu_845 | 2 | 2 | 0.00064919 |
| Digitaria exilis | Dexi_CM05836_chr07B | 2 | CH_dex_151 | 3 | 3 | 0.000000016754 |
| Eragrostis curvula | Contig30 | 2 | CH_ecu_568 | 2 | 3 | 0.000116315 |
| Miscanthus sinensis | Chr11 | 2 | CH_msi_131 | 3 | 3 | 0.0000000311035 |
| Miscanthus sinensis | Chr12 | 2 | CH_msi_173 | 3 | 5 | 0.000000311002 |
| Panicum hallii | Chr07 | 2 | CH_pha_99 | 3 | 4 | 0.0000000202612 |
| Sorghum bicolor | Chr06 | 2 | CH_sbi_113 | 3 | 4 | 0.0000000206518 |
| Setaria italica | scaffold_7 | 2 | CH_sit_134 | 3 | 5 | 0.000000050534 |
| Saccharum spontaneum | Chr5D | 2 | CH_ssp_357 | 3 | 5 | 0.00000102451 |
| Saccharum spontaneum | Chr5C | 2 | CH_ssp_469 | 3 | 8 | 0.00000573596 |
| Setaria viridis | Chr_07 | 2 | CH_svi_126 | 3 | 5 | 0.0000000408378 |
| Triticum aestivum | Chr5A | 2 | CH_tae_1245 | 3 | 24 | 0.000303345 |
| Triticum turgidum | chr5A | 2 | CH_ttu_485 | 3 | 16 | 0.0000688454 |
| Zea mays B73 | 2 | 2 | CH_zma_260 | 2 | 2 | 0.000511313 |
| Zostera marina | Chr01 | 2 | CH_zosmarina_177 | 2 | 2 | 0.000289673 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |