Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.degradation

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Zostera marina Chr06 1 CH_zosmarina_142 5 30 0.000152203
Zostera marina Chr06 2 CH_zosmarina_142 5 30 0.000152203

Available child term results

Ontology identifier Description Number of clusters
4.2.1 Amino acid metabolism.degradation.arginine 4
4.2.1.1 Amino acid metabolism.degradation.arginine.arginase 8
4.2.1.2 Amino acid metabolism.degradation.arginine.urease 6
4.2.1.3 Amino acid metabolism.degradation.arginine.urease accessory protein activities 2
4.2.1.3.1 Amino acid metabolism.degradation.arginine.urease accessory protein activities.urease accessory protein (ureD) 4
4.2.1.3.2 Amino acid metabolism.degradation.arginine.urease accessory protein activities.urease accessory protein (ureF) 6
4.2.1.3.3 Amino acid metabolism.degradation.arginine.urease accessory protein activities.urease accessory protein (ureG) 6
4.2.2.1 Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).gamma-aminobutyric acid pyruvate transaminase 16
4.2.2.2.1 Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).succinate formation.NAD-dependent succinic semialdehyde dehydrogenase 2
4.2.2.3.1 Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).gamma-hydroxybutyrate formation.bifunctional gamma-hydroxybutyrate dehydrogenase and glyoxylate reductase 8
4.2.3.1 Amino acid metabolism.degradation.proline.proline dehydrogenase 6
4.2.3.2 Amino acid metabolism.degradation.proline.delta-1-pyrroline-5-carboxylate dehydrogenase 4
4.2.4.1 Amino acid metabolism.degradation.lysine.bifunctional lysine ketoglutarate reductase and saccharopine dehydrogenase 6
4.2.4.2 Amino acid metabolism.degradation.lysine.piperideine-6-carboxylate dehydrogenase 4
4.2.4.3 Amino acid metabolism.degradation.lysine.D-2-hydroxyglutarate synthase 6
4.2.4.4 Amino acid metabolism.degradation.lysine.D-2-hydroxyglutarate dehydrogenase 2
4.2.5.1 Amino acid metabolism.degradation.threonine.threonine aldolase 34
4.2.5.2 Amino acid metabolism.degradation.threonine.threonine dehydratase 8
4.2.6.2 Amino acid metabolism.degradation.cysteine.sulfur dioxygenase 2
4.2.6.3 Amino acid metabolism.degradation.cysteine.cysteine desulfhydrase 36
4.2.7.2 Amino acid metabolism.degradation.branched-chain amino acid.branched-chain alpha-keto acid dehydrogenase complex 2
4.2.7.2.1.1 Amino acid metabolism.degradation.branched-chain amino acid.branched-chain alpha-keto acid dehydrogenase complex.E1 2-oxoisovalerate dehydrogenase subcomplex.subunit alpha 2
4.2.7.2.3 Amino acid metabolism.degradation.branched-chain amino acid.branched-chain alpha-keto acid dehydrogenase complex.dihydrolipoamide dehydrogenase component E3 4
4.2.7.4 Amino acid metabolism.degradation.branched-chain amino acid.3-hydroxyisobutyryl-CoA hydrolase (CHY) 12
4.2.7.5.1.1 Amino acid metabolism.degradation.branched-chain amino acid.leucine.methylcrotonoyl-CoA carboxylase heterodimer.subunit alpha 4
4.2.7.5.2 Amino acid metabolism.degradation.branched-chain amino acid.leucine.hydroxymethylglutaryl-CoA lyase 10
4.2.7.5.3 Amino acid metabolism.degradation.branched-chain amino acid.leucine.methylglutaconyl-CoA hydratase 44
4.2.7.6.1 Amino acid metabolism.degradation.branched-chain amino acid.valine.3-hydroxyisobutyrate dehydrogenase 2
4.2.7.6.2 Amino acid metabolism.degradation.branched-chain amino acid.valine.methylmalonate-semialdehyde dehydrogenase 6
4.2.7.8.1.1 Amino acid metabolism.degradation.branched-chain amino acid.acyl-CoA dehydrogenase oxidation.ETF electron transfer flavoprotein heterodimer.subunit alpha 6
4.2.7.8.2 Amino acid metabolism.degradation.branched-chain amino acid.acyl-CoA dehydrogenase oxidation.electron transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) 6
4.2.8 Amino acid metabolism.degradation.aromatic amino acid 2
4.2.8.1 Amino acid metabolism.degradation.aromatic amino acid.aromatic-amino-acid aminotransferase 4
4.2.8.3 Amino acid metabolism.degradation.aromatic amino acid.aromatic amino acid decarboxylase 82
4.2.8.4 Amino acid metabolism.degradation.aromatic amino acid.tyrosine 2
4.2.8.4.1 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.tyrosine aminotransferase (TAT) 54
4.2.8.4.2 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.homogentisate dioxygenase 4
4.2.8.4.3 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.maleylacetoacetate isomerase 46
4.2.8.4.4 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.fumarylacetoacetate hydrolase (FAH) 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001