Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Saccharum spontaneum Chr8C 1 CH_ssp_939 11 63 0.000253988
Vanilla planifolia CM028152.1 1 CH_vpl_386 6 13 0.000978626
Saccharum spontaneum Chr8C 2 CH_ssp_939 11 63 0.000253988
Vanilla planifolia CM028152.1 2 CH_vpl_386 6 13 0.000978626

Available child term results

Ontology identifier Description Number of clusters
11.1.1.3 Phytohormone action.abscisic acid.biosynthesis.neoxanthin biosynthesis cofactor (NXD1) 4
11.1.1.5 Phytohormone action.abscisic acid.biosynthesis.xanthoxin oxidase (ABA2) 18
11.1.1.6 Phytohormone action.abscisic acid.biosynthesis.xanthoxin oxidase molybdopterin sulfurase (ABA3) 6
11.1.1.7 Phytohormone action.abscisic acid.biosynthesis.abscisic aldehyde oxidase 78
11.1.2.1.1.1 Phytohormone action.abscisic acid.perception and signalling.receptor activities.cytoplasm-localized receptor complex.receptor component PYL/RCAR 6
11.1.2.1.1.2 Phytohormone action.abscisic acid.perception and signalling.receptor activities.cytoplasm-localized receptor complex.regulatory phosphatase component 2
11.1.2.1.2 Phytohormone action.abscisic acid.perception and signalling.receptor activities.recruitment factor (CAR) 26
11.1.2.1.3 Phytohormone action.abscisic acid.perception and signalling.receptor activities.regulatory phosphatase positive regulator (EAR1) 4
11.1.2.1.4 Phytohormone action.abscisic acid.perception and signalling.receptor activities.plasma membrane-localized receptor (GTG) 8
11.1.2.2 Phytohormone action.abscisic acid.perception and signalling.signal transducer (AIP2) 4
11.1.2.4 Phytohormone action.abscisic acid.perception and signalling.signal transducer (KEG) 6
11.1.2.5 Phytohormone action.abscisic acid.perception and signalling.signal transducer (SDIR1) 2
11.1.2.7 Phytohormone action.abscisic acid.perception and signalling.perception modulator (SOAR) 2
11.1.3.1 Phytohormone action.abscisic acid.conjugation and degradation.abscisic acid UDP-glycosyltransferase 2
11.1.3.2 Phytohormone action.abscisic acid.conjugation and degradation.abscisic acid hydroxylase 2
11.1.4.1 Phytohormone action.abscisic acid.transport.abscisic acid transporter (AIT) 6
11.10 Phytohormone action.signalling peptides 2
11.10.1 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category 2
11.10.1.1.1 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.PIP/PIPL-peptide activity.PIP/PIPL-precursor polypeptide 26
11.10.1.10.1 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CLE-peptide activity.CLE-precursor polypeptide 60
11.10.1.11.1 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.IMA/FEP-peptide activity.IMA/FEP precursor polypeptide 12
11.10.1.12.1 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.PNP-peptide activity.PNP precursor polypeptide 38
11.10.1.12.2 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.PNP-peptide activity.PNP peptide receptor (PNP-R) 6
11.10.1.2.1 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.phytosulfokine activity.pythosulfokine precursor polypeptide (PSK) 12
11.10.1.2.2 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.phytosulfokine activity.pythosulfokine peptide receptor (PSKR) 20
11.10.1.3.1 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CEP-peptide activity.CEP-precursor polypeptide 46
11.10.1.3.2 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CEP-peptide activity.CEP-peptide receptor (CEPR) 4
11.10.1.4.1 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CIF-peptide activity.TWS-precursor polypeptide (TWS1) 2
11.10.1.4.2 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CIF-peptide activity.CIF-precursor polypeptide 6
11.10.1.4.3 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CIF-peptide activity.CIF/TWS1-peptide receptor (GSO) 2
11.10.1.5.2 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.IDL-peptide activity.IDA/IDL-peptide receptor (HAESA) 4
11.10.1.6.1 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.DVL/ROT-peptide activity.DVL/RTFL-precursor polypeptide 68
11.10.1.7 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.TDL-peptide activity 2
11.10.1.7.1 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.TDL-peptide activity.TDL-precursor polypeptide 16
11.10.1.7.2 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.TDL-peptide activity.TDL-peptide receptor (EMS1/MSP1) 2
11.10.1.8.1 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.GLV/RGF/CLEL-peptide activity.RGF-precursor polypeptide 2
11.10.1.8.2 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.GLV/RGF/CLEL-peptide activity.RGF-peptide receptor (RGFR) 2
11.10.1.9 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CLE-TDIF-peptide activity 2
11.10.2 Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category 4
11.10.2.1.1 Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.GASA/GAST-peptide activity.GASA-precursor polypeptide 14
11.10.2.2.1 Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.STIG1-peptide activity.STIG1/GRI-precursor polypeptide 50
11.10.2.3.3 Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.EPF/EPFL-peptide activity.EPF-peptide receptor (TMM) 2
11.10.2.4 Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.RALF/RALFL-peptide activity 2
11.10.2.4.1 Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.RALF/RALFL-peptide activity.RALF/RALFL-precursor polypeptide 24
11.10.2.4.2 Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.RALF/RALFL-peptide activity.RALF-peptide receptor (CrRLK1L) 16
11.10.2.4.3 Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.RALF/RALFL-peptide activity.receptor CrRLK1L chaperone (LLG) 40
11.10.2.5.1 Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.EC1-peptide activity.EC1-precursor polypeptide 20
11.2 Phytohormone action.auxin 2
11.2.1 Phytohormone action.auxin.biosynthesis 2
11.2.1.1 Phytohormone action.auxin.biosynthesis.indole-3-pyruvic acid (IPyA) pathway 4
11.2.1.1.1 Phytohormone action.auxin.biosynthesis.indole-3-pyruvic acid (IPyA) pathway.tryptophan aminotransferase 20
11.2.1.1.2 Phytohormone action.auxin.biosynthesis.indole-3-pyruvic acid (IPyA) pathway.flavin-dependent monooxygenase (YUCCA) 70
11.2.1.2.1 Phytohormone action.auxin.biosynthesis.indole-3-acetamide (IAM) pathway.indole-3-acetamide hydrolase 12
11.2.2.1 Phytohormone action.auxin.perception and signal transduction.substrate adaptor of SCF ubiquitin ligase (TIR1/AFB) 4
11.2.2.2 Phytohormone action.auxin.perception and signal transduction.transcriptional repressor (IAA/AUX) 16
11.2.3.1 Phytohormone action.auxin.conjugation and degradation.indole-3-acetic acid-amido synthetase 2
11.2.3.2 Phytohormone action.auxin.conjugation and degradation.indole-3-acetic acid carboxyl methyltransferase (MES17) 32
11.2.3.3 Phytohormone action.auxin.conjugation and degradation.SAM dependent carboxyl methyltransferase (IAMT1) 12
11.2.3.4 Phytohormone action.auxin.conjugation and degradation.indole-3-acetic acid dioxygenase 24
11.2.4.1.1 Phytohormone action.auxin.transport.polar auxin transport.auxin transporter (PIN) 28
11.2.4.1.2 Phytohormone action.auxin.transport.polar auxin transport.regulatory kinase (PINOID) 2
11.2.4.1.3 Phytohormone action.auxin.transport.polar auxin transport.regulatory protein (BIG) 8
11.2.4.3 Phytohormone action.auxin.transport.auxin efflux transporter (ABCB19) 2
11.3 Phytohormone action.brassinosteroid 2
11.3.1.1 Phytohormone action.brassinosteroid.biosynthesis.steroid 22-alpha-hydroxylase (DWF4) 2
11.3.1.2 Phytohormone action.brassinosteroid.biosynthesis.steroid 3-dehydrogenase (CPD) 2
11.3.1.3 Phytohormone action.brassinosteroid.biosynthesis.steroid 5-alpha-reductase (DET2) 4
11.3.1.4 Phytohormone action.brassinosteroid.biosynthesis.3-epi-6-deoxocathasterone 23-monooxygenase 2
11.3.1.5 Phytohormone action.brassinosteroid.biosynthesis.6-deoxocastasterone 6-oxidase (BR6OX) 22
11.3.2.1.1 Phytohormone action.brassinosteroid.perception and signal transduction.receptor complex.receptor protein kinase (BRI/BRL) 2
11.3.2.1.3 Phytohormone action.brassinosteroid.perception and signal transduction.receptor complex.receptor kinase inhibitor (BKI) 4
11.3.2.2 Phytohormone action.brassinosteroid.perception and signal transduction.protein phosphatase (BSU/BSL) 2
11.3.2.4 Phytohormone action.brassinosteroid.perception and signal transduction.transcription factor (BES/BZR) 4
11.3.2.5 Phytohormone action.brassinosteroid.perception and signal transduction.scaffold protein (TTL) 6
11.3.3.1 Phytohormone action.brassinosteroid.conjugation and degradation.steroid sulphotransferase 6
11.3.3.2 Phytohormone action.brassinosteroid.conjugation and degradation.brassinosteroid hydroxylase (CYP72B) 4
11.4 Phytohormone action.cytokinin 2
11.4.1.1 Phytohormone action.cytokinin.biosynthesis.adenylate isopentenyltransferase 8
11.4.1.2 Phytohormone action.cytokinin.biosynthesis.cytokinin phosphoribohydrolase 12
11.4.2 Phytohormone action.cytokinin.perception and signal transduction 16
11.4.2.1 Phytohormone action.cytokinin.perception and signal transduction.receptor protein (AHK) 2
11.4.2.2 Phytohormone action.cytokinin.perception and signal transduction.signal transducer (AHP) 34
11.4.2.3 Phytohormone action.cytokinin.perception and signal transduction.signalling pathway activator (CKI1) 2
11.4.2.4 Phytohormone action.cytokinin.perception and signal transduction.B-type ARR response activator 24
11.4.2.5 Phytohormone action.cytokinin.perception and signal transduction.A-type ARR response negative regulator 12
11.4.3 Phytohormone action.cytokinin.conjugation and degradation 2
11.4.3.1 Phytohormone action.cytokinin.conjugation and degradation.UDP-dependent glycosyl transferase 70
11.4.3.2 Phytohormone action.cytokinin.conjugation and degradation.cytokinin dehydrogenase 18
11.5.1.1 Phytohormone action.ethylene.biosynthesis.1-aminocyclopropane-1-carboxylate (ACC) synthase 8
11.5.1.2 Phytohormone action.ethylene.biosynthesis.1-aminocyclopropane-1-carboxylate (ACC) oxidase 36
11.5.1.3 Phytohormone action.ethylene.biosynthesis.regulatory substrate adaptor of CUL3-BTB E3 ubiquitin ligase (ETO) 6
11.5.2 Phytohormone action.ethylene.perception and signal transduction 4
11.5.2.1 Phytohormone action.ethylene.perception and signal transduction.receptor protein (ETR/ERS) 6
11.5.2.3 Phytohormone action.ethylene.perception and signal transduction.receptor regulatory factor (TRP1) 6
11.5.2.4 Phytohormone action.ethylene.perception and signal transduction.signal modulator (ARGOS) 10
11.5.2.6 Phytohormone action.ethylene.perception and signal transduction.signal transducer (EIN2) 26
11.5.2.7 Phytohormone action.ethylene.perception and signal transduction.EIN2-stabilizing factor (MHZ3) 4
11.5.2.8 Phytohormone action.ethylene.perception and signal transduction.signal transducer (EIN3/EIL) 20
11.5.2.9 Phytohormone action.ethylene.perception and signal transduction.EIN3-substrate-adaptor of SCF ubiquitin protein ligase complex (EBF) 4
11.6.1 Phytohormone action.gibberellin.biosynthesis 34
11.6.1.1 Phytohormone action.gibberellin.biosynthesis.ent-copalyl diphosphate synthase 12
11.6.1.2 Phytohormone action.gibberellin.biosynthesis.ent-kaurene synthase 46
11.6.1.3 Phytohormone action.gibberellin.biosynthesis.ent-kaurene oxidase 4
11.6.1.4 Phytohormone action.gibberellin.biosynthesis.ent-kaurenoic acid oxidase 44
11.6.1.5 Phytohormone action.gibberellin.biosynthesis.gibberellin 20-oxidase 4
11.6.1.6 Phytohormone action.gibberellin.biosynthesis.gibberellin 3-oxidase 12
11.6.2.1 Phytohormone action.gibberellin.perception and signal transduction.receptor protein (GID1) 2
11.6.2.3 Phytohormone action.gibberellin.perception and signal transduction.substrate adaptor of SCF ubiquitin ligase (SLY) 6
11.6.3.1 Phytohormone action.gibberellin.modification and degradation.gibberellin modification enzyme (ELA) 32
11.6.3.2 Phytohormone action.gibberellin.modification and degradation.SAM-dependent carboxyl methyltransferase (GAMT) 2
11.6.3.4 Phytohormone action.gibberellin.modification and degradation.gibberellin 2-oxidase (Ga2-Ox) 6
11.6.4.1 Phytohormone action.gibberellin.transport.multi-functional transporter (NPF3.1) 2
11.7.1.1 Phytohormone action.jasmonic acid.biosynthesis.phospholipase A (DAD1) 4
11.7.1.2 Phytohormone action.jasmonic acid.biosynthesis.13-lipoxygenase (LOX) 18
11.7.1.3 Phytohormone action.jasmonic acid.biosynthesis.allene oxidase synthase (AOS) 36
11.7.1.4 Phytohormone action.jasmonic acid.biosynthesis.allene oxidase cyclase (AOC) 6
11.7.1.5 Phytohormone action.jasmonic acid.biosynthesis.oxophytodienoate export protein (JASSY) 4
11.7.1.6 Phytohormone action.jasmonic acid.biosynthesis.oxophytodienoate reductase (OPR3) 10
11.7.1.7 Phytohormone action.jasmonic acid.biosynthesis.OPC-8:CoA synthetase (ACS) 6
11.7.1.8 Phytohormone action.jasmonic acid.biosynthesis.OPC-8:CoA oxidase (ACX1) 4
11.7.1.9 Phytohormone action.jasmonic acid.biosynthesis.acyl-CoA thioesterase (ACH) 20
11.7.2.1.1 Phytohormone action.jasmonic acid.perception and signal transduction.receptor complex.component COI 4
11.7.3.2 Phytohormone action.jasmonic acid.conjugation and degradation.jasmonoyl-amino acid synthetase (JAR1) 24
11.7.3.3 Phytohormone action.jasmonic acid.conjugation and degradation.jasmonoyl-amino acid carboxylase 6
11.7.3.4 Phytohormone action.jasmonic acid.conjugation and degradation.jasmonoyl-amino acid hydroxylase 6
11.8.1.1 Phytohormone action.salicylic acid.biosynthesis.isochorismate synthase 4
11.8.2.1 Phytohormone action.salicylic acid.perception and signal transduction.receptor protein (NPR3/4) 6
11.8.3.3 Phytohormone action.salicylic acid.conjugation and degradation.UDP-dependent glycosyl transferase 2
11.8.3.4 Phytohormone action.salicylic acid.conjugation and degradation.salicylic acid 3-hydroxylase (DLO) 8
11.8.4.1 Phytohormone action.salicylic acid.transport.salicylic acid transporter (EDS5) 2
11.9.1 Phytohormone action.strigolactone.biosynthesis 2
11.9.1.2 Phytohormone action.strigolactone.biosynthesis.carotenoid cleavage dioxygenase (CCD7) 8
11.9.1.3 Phytohormone action.strigolactone.biosynthesis.carotenoid cleavage dioxygenase (CCD8) 34
11.9.1.4 Phytohormone action.strigolactone.biosynthesis.monooxygenase (MAX1) 40
11.9.1.5 Phytohormone action.strigolactone.biosynthesis.oxidoreductase (LBO) 4
11.9.2.1 Phytohormone action.strigolactone.perception and signal transduction.receptor protein (D14) 2
11.9.2.2 Phytohormone action.strigolactone.perception and signal transduction.signal transducer (MAX2) 6
11.9.2.3 Phytohormone action.strigolactone.perception and signal transduction.signal modulator (SMXL) 2
11.9.2.5 Phytohormone action.strigolactone.perception and signal transduction.signal transducer (DLK2) 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001